SMTL ID : 9mvy.2 (1 other biounit)

Crystal structure of ZMET2 in complex with unmethylated CTG DNA and a histone H3Kc9me2 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

hetero-1-2-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: Y.218, S.219, G.220, C.221, G.222, G.223, M.224, D.246, F.247, N.248, E.267, K.268, A.269, G.385, P.387, Q.411, N.722, A.723, V.724 Chain C: C.10 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:C.221, A:G.222, A:G.223, A:M.224, A:F.247, A:A.269, A:Q.411, A:N.722, A:V.724 Water bridges: A:D.270, A:Q.411, A:N.722 pi-Stacking: A:Y.218, A:F.247, A:F.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herle, G. et al., Structure of an Unfavorable de Novo DNA Methylation Complex of Plant Methyltransferase ZMET2. J.Mol.Biol. (2025)

Release Date

2025-05-21

Peptides

DNA (cytosine-5)-methyltransferase 1: A
Histone H3.2: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

D
G

E
I

DNA (cytosine-5)-methyltransferase 1

Histone H3.2

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