SMTL ID : 9n3h.1

Crystal structure of HBV capsid with compound 18

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

homo-dimer

Ligands

2 x 01: N-[3-(difluoromethyl)phenyl]-5-[{[(1s,4s)-4-hydroxycyclohexyl]amino}(oxo)acetyl]-1,2,4-trimethyl-1H-pyrrole-3-carboxamide

01.1: 13 residues within 4Å: Chain A: F.26, P.28, L.33, T.36, W.105, I.108, S.109, F.113, Y.121, P.141, I.142, L.143, S.144 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.26, A:P.28, A:L.33, A:F.113 Hydrogen bonds: A:L.143, A:L.143 01.2: 12 residues within 4Å: Chain B: F.26, P.28, L.33, W.105, I.108, S.109, F.113, Y.121, P.141, I.142, L.143, S.144 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.26, B:P.28, B:L.33, B:F.113, B:Y.121 Hydrogen bonds: B:L.143, B:L.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Discovery of VNRX-9945, a Potent, Broadly Active Capsid Assembly Modulator as a Clinical Candidate for the Treatment of Chronic Hepatitis B Virus Infection. Acs Med.Chem.Lett. (2025)

Release Date

2025-07-02

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid protein

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