SMTL ID : 9nao.1

MicroED structure of papain complexed with natural product E64-A65

Coordinates

PDB Format Compare

Method

ELECTRON CRYSTALLOGRAPHY 2.50 Å

Oligo State

monomer

Ligands

1 x 01: (3S)-4-({(1S)-2-[(8-aminooctyl)amino]-1-cyclobutyl-2-oxoethyl}amino)-3-hydroxy-4-oxobutanoic acid

01.1: 14 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, Y.61, N.64, G.65, G.66, Y.67, V.133, D.158, H.159, A.160 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.61, A:Y.61, A:Y.61, A:V.133 Hydrogen bonds: A:Q.19, A:G.23, A:C.25, A:G.66, A:G.66, A:D.158 Salt bridges: A:H.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vlahakis, N.W. et al., Combining MicroED and native mass spectrometry for structural discovery of enzyme-biosynthetic inhibitor complexes. Biorxiv (2025)

Release Date

2025-03-26

Peptides

Papain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain

Related Entries With Identical Sequence