SMTL ID : 9nb7.1

Serial synchrotron X-ray diffraction structure of papain microcrystals soaked with natural product E405

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 01: (3R)-4-({(2S)-1-[(5-acetamidopentyl)amino]-1-oxo-3-phenylpropan-2-yl}amino)-3-hydroxy-4-oxobutanoic acid

01.1: 16 residues within 4Å: Chain A: Q.19, C.22, G.23, S.24, C.25, W.26, Y.61, N.64, G.65, G.66, Y.67, P.68, V.133, V.157, D.158, H.159 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.61, A:Y.67, A:V.133, A:V.157 Hydrogen bonds: A:Q.19, A:G.23, A:C.25, A:N.64, A:G.66, A:D.158 Salt bridges: A:H.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vlahakis, N.W. et al., Combining MicroED and native mass spectrometry for structural discovery of enzyme-biosynthetic inhibitor complexes. Biorxiv (2025)

Release Date

2025-03-26

Peptides

Papain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain

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