SMTL ID : 9nyo.1

Clostridium acetobutylicum alcohol dehydrogenase bound to NADP+, disordered nicotinamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 31 residues within 4Å: Chain A: G.31, A.32, S.33, S.34, G.35, I.36, G.37, I.54, A.55, R.56, R.57, I.82, D.83, L.84, S.85, N.108, A.109, G.110, F.111, L.131, I.158, S.159, S.160, A.161, G.162, Y.173, K.177, P.205, A.206, A.207, M.237 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:S.33, A:S.33, A:S.33, A:S.34, A:S.34, A:S.34, A:S.34, A:I.36, A:R.56, A:R.57, A:L.84, A:S.85, A:G.110, A:S.160, A:Y.173, A:K.177, A:A.206 Water bridges: A:S.85, A:N.108, A:G.162, A:G.162 Salt bridges: A:R.56, A:R.57 NAP.2: 30 residues within 4Å: Chain B: G.31, A.32, S.33, S.34, G.35, I.36, G.37, I.54, A.55, R.56, R.57, I.82, D.83, L.84, S.85, N.108, A.109, G.110, F.111, L.131, I.158, S.159, S.160, A.161, G.162, Y.173, K.177, P.205, A.206, M.237 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:I.36 Hydrogen bonds: B:S.33, B:S.33, B:S.33, B:S.34, B:S.34, B:S.34, B:S.34, B:I.36, B:R.56, B:R.57, B:L.84, B:S.85, B:N.108, B:G.110, B:Y.173, B:K.177, B:A.206 Water bridges: B:R.56, B:R.56, B:N.108, B:G.162, B:G.162 Salt bridges: B:R.56, B:R.57

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: V.144, E.148, L.187, E.190, L.191, A.194, S.196 Chain B: K.116, V.117, N.118 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:E.190, B:V.117, B:N.118, B:N.118 EDO.4: 10 residues within 4Å: Chain A: K.116, V.117, N.118 Chain B: V.144, E.148, L.187, E.190, L.191, A.194, S.196 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:V.117, A:N.118, A:N.118, B:E.190 Water bridges: B:E.148, B:E.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudalkar, G.P. et al., Is a Malleable Active Site Loop the Key to High Substrate Promiscuity? Hybrid, Biocatalytic Route to Structurally Diverse Taxoid Side Chains with Remarkable Dual Stereocontrol. Angew.Chem.Int.Ed.Engl. (2025)

Release Date

2025-07-02

Peptides

Oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Oxidoreductase

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