SMTL ID : 9ok6.1 (1 other biounit)

Crystal structure of TNF alpha in complex with compound 19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

homo-trimer

Ligands

1 x 01: (4S,8aR)-7-{5-[(6R,13R,14S)-5,14-dihydro-7H-6,14-methanopyrido[3',2':4,5]imidazo[1,2-b][2,5]benzodiazocin-11-yl]pyrimidin-2-yl}hexahydroimidazo[1,5-a]pyrazin-3(2H)-one

01.1: 19 residues within 4Å: Chain A: L.58, Y.60, Y.120, V.124, I.156, L.158 Chain B: L.58, Y.60, Y.120, L.121, Y.152, I.156 Chain C: K.12, L.58, Y.120, G.122, I.156, A.157, L.158 10 PLIP interactions: 5 interactions with chain A, 2 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: A:L.58, A:L.58, A:Y.60, A:V.124, A:L.158, B:L.58 Hydrogen bonds: C:K.12, C:K.12, B:Y.152 pi-Stacking: B:Y.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bian, Z. et al., Discovery of Orally Efficacious Bridged Piperazines as smTNF Modulators. J.Med.Chem. (2025)

Release Date

2025-07-23

Peptides

Tumor necrosis factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tumor necrosis factor

Related Entries With Identical Sequence