SMTL ID : 9oti.1

GATOR2 complex bound to arginine sensor CASTOR1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-2-2-6-2-2-mer

Ligands

29 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.737, C.740, C.775, C.778 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.737, A:C.740, A:C.775, A:C.778 ZN.2: 4 residues within 4Å: Chain A: C.785, C.788, H.835, H.838 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.785, A:C.788, A:H.835, A:H.838 ZN.3: 4 residues within 4Å: Chain A: C.827, C.830, C.856, C.858 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.827, A:C.830, A:C.856, A:C.858 ZN.4: 4 residues within 4Å: Chain A: C.830, H.832, C.849, C.854 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.830, A:H.832, A:C.849, A:C.854 ZN.5: 5 residues within 4Å: Chain B: C.785, C.788, H.835, H.838 Ligands: ZN.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.785, B:C.788, B:H.835, B:H.838 ZN.6: 4 residues within 4Å: Chain B: C.827, C.830, C.856, C.858 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.827, B:C.830, B:C.856, B:C.858 ZN.7: 5 residues within 4Å: Chain B: C.830, H.832, C.849, V.851, C.854 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.830, B:H.832, B:C.849, B:C.854 ZN.8: 6 residues within 4Å: Chain B: C.785, A.786, L.787, C.788, L.789 Ligands: ZN.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.785, B:C.785 ZN.9: 4 residues within 4Å: Chain C: C.719, C.722, C.733, C.736 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.719, C:C.722, C:C.733, C:C.736 ZN.10: 4 residues within 4Å: Chain C: C.743, C.746, H.765, H.768 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.743, C:C.746, C:H.765, C:H.768 ZN.11: 4 residues within 4Å: Chain C: C.757, C.760, H.785, C.787 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.757, C:C.760, C:H.785, C:C.787 ZN.12: 4 residues within 4Å: Chain C: C.760, H.762, C.779, C.783 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.760, C:H.762, C:C.779, C:C.783 ZN.13: 4 residues within 4Å: Chain D: C.924, C.927, H.946, H.949 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.924, D:C.927, D:H.946, D:H.949 ZN.14: 6 residues within 4Å: Chain D: C.938, T.940, C.941, C.966, C.968 Ligands: ZN.15 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.938, D:C.941, D:C.966, D:C.968 ZN.15: 5 residues within 4Å: Chain D: C.941, H.943, C.960, C.964 Ligands: ZN.14 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.941, D:H.943, D:C.960, D:C.964 ZN.16: 4 residues within 4Å: Chain I: C.737, C.740, C.775, C.778 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.737, I:C.740, I:C.775, I:C.778 ZN.17: 4 residues within 4Å: Chain I: C.785, C.788, H.835, H.838 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.785, I:C.788, I:H.835, I:H.838 ZN.18: 4 residues within 4Å: Chain I: C.827, C.830, C.856, C.858 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.827, I:C.830, I:C.856, I:C.858 ZN.19: 4 residues within 4Å: Chain I: C.830, H.832, C.849, C.854 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.830, I:H.832, I:C.849, I:C.854 ZN.20: 4 residues within 4Å: Chain J: C.719, C.722, C.733, C.736 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.719, J:C.722, J:C.733, J:C.736 ZN.21: 4 residues within 4Å: Chain J: C.743, C.746, H.765, H.768 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.743, J:C.746, J:H.765, J:H.768 ZN.22: 4 residues within 4Å: Chain J: C.757, C.760, H.785, C.787 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.757, J:C.760, J:H.785, J:C.787 ZN.23: 4 residues within 4Å: Chain J: C.760, H.762, C.779, C.783 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.760, J:H.762, J:C.779, J:C.783 ZN.24: 4 residues within 4Å: Chain K: C.924, C.927, H.946, H.949 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.924, K:C.927, K:H.946, K:H.949 ZN.25: 5 residues within 4Å: Chain K: C.938, C.941, C.966, C.968 Ligands: ZN.26 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.938, K:C.941, K:C.966, K:C.968 ZN.26: 6 residues within 4Å: Chain K: C.941, H.943, C.960, T.962, C.964 Ligands: ZN.25 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.941, K:H.943, K:C.960, K:C.964 ZN.27: 4 residues within 4Å: Chain P: C.785, C.788, H.835, H.838 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:C.785, P:C.788, P:H.835, P:H.838 ZN.28: 4 residues within 4Å: Chain P: C.827, C.830, C.856, C.858 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:C.827, P:C.830, P:C.856, P:C.858 ZN.29: 4 residues within 4Å: Chain P: C.830, H.832, C.849, C.854 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:C.830, P:H.832, P:C.849, P:C.854

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jansen, R.M. et al., Structural basis for mTORC1 regulation by the CASTOR1-GATOR2 complex. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-10-01

Peptides

GATOR2 complex protein MIOS: ABIP
GATOR complex protein WDR24: CJ
GATOR complex protein WDR59: DK
Nucleoporin SEH1: EFGLMN
Protein SEC13 homolog: HO
Cytosolic arginine sensor for mTORC1 subunit 1: QR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

I
L

P
T

C
C

J
M

D
D

K
N

E
E

F
F

G
G

L
O

M
P

N
Q

H
H

O
R

Q
U

R
V

GATOR2 complex protein MIOS

GATOR complex protein WDR24

GATOR complex protein WDR59

Nucleoporin SEH1

Protein SEC13 homolog

Cytosolic arginine sensor for mTORC1 subunit 1

Related Entries With Identical Sequence