SMTL ID : 9pff.1

Min22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a H3:SNAP-25 SN1), non-hydrolyzing, class 27

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-4-6-mer

Ligands

10 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain I: Y.505, I.506, M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, S.550, G.551, K.552, T.553, A.554, L.555, I.710, K.711, L.714 Chain N: K.634 21 PLIP interactions: 20 interactions with chain I, 1 interactions with chain N Hydrogen bonds: I:M.507, I:N.508, I:G.509, I:I.511, I:I.511, I:W.513, I:H.549, I:S.550, I:G.551, I:K.552, I:T.553, I:A.554 Water bridges: I:N.508, I:T.553 Salt bridges: I:H.549, I:K.552, I:K.552, I:K.711, I:K.711, I:K.711, N:K.634 ATP.3: 22 residues within 4Å: Chain I: K.254, D.362, R.388, R.391 Chain J: G.222, I.223, G.224, L.226, P.265, G.266, C.267, G.268, K.269, T.270, L.271, N.377, I.409, I.412, H.413, G.441, A.442, E.445 21 PLIP interactions: 6 interactions with chain I, 15 interactions with chain J Water bridges: I:R.388, I:R.388, J:T.270 Salt bridges: I:R.388, I:R.388, I:R.388, I:R.391, J:K.269, J:K.269 Hydrogen bonds: J:G.224, J:G.224, J:G.266, J:C.267, J:G.268, J:K.269, J:T.270, J:T.270, J:L.271, J:N.377, J:H.413, J:E.445 ATP.4: 20 residues within 4Å: Chain I: K.634 Chain J: I.506, M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, S.550, G.551, K.552, T.553, A.554, L.555, I.710, K.711, L.714 20 PLIP interactions: 19 interactions with chain J, 1 interactions with chain I Hydrogen bonds: J:M.507, J:N.508, J:G.509, J:I.511, J:I.511, J:W.513, J:H.549, J:S.550, J:G.551, J:K.552, J:T.553, J:T.553, J:A.554 Salt bridges: J:H.549, J:K.552, J:K.552, J:K.711, J:K.711, J:K.711, I:K.634 ATP.5: 20 residues within 4Å: Chain J: K.634 Chain K: I.506, M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, S.550, G.551, K.552, T.553, A.554, L.555, I.710, K.711, L.714 21 PLIP interactions: 18 interactions with chain K, 3 interactions with chain J Hydrogen bonds: K:M.507, K:N.508, K:N.508, K:G.509, K:I.511, K:I.511, K:W.513, K:H.549, K:G.551, K:K.552, K:T.553, K:A.554 Salt bridges: K:H.549, K:K.552, K:K.552, K:K.711, K:K.711, K:K.711, J:K.634 Water bridges: J:K.634, J:K.634 ATP.6: 21 residues within 4Å: Chain J: K.254, R.388, R.391 Chain K: G.222, I.223, G.224, L.226, P.265, G.266, C.267, G.268, K.269, T.270, L.271, N.377, I.409, I.412, H.413, G.441, A.442, E.445 21 PLIP interactions: 16 interactions with chain K, 5 interactions with chain J Hydrogen bonds: K:G.224, K:G.224, K:G.266, K:C.267, K:G.268, K:K.269, K:T.270, K:T.270, K:L.271, K:N.377, K:H.413, K:E.445, J:K.254 Water bridges: K:K.269, K:T.270 Salt bridges: K:K.269, K:K.269, J:R.388, J:R.388, J:R.388, J:R.391 ATP.7: 21 residues within 4Å: Chain K: K.634 Chain L: Y.505, I.506, M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, S.550, G.551, K.552, T.553, A.554, L.555, I.710, K.711, L.714 25 PLIP interactions: 22 interactions with chain L, 3 interactions with chain K Hydrogen bonds: L:M.507, L:N.508, L:N.508, L:G.509, L:I.511, L:I.511, L:W.513, L:H.549, L:S.550, L:G.551, L:K.552, L:T.553, L:T.553, L:A.554 Water bridges: L:H.549, L:H.549, K:K.634, K:K.634 Salt bridges: L:H.549, L:K.552, L:K.552, L:K.711, L:K.711, L:K.711, K:K.634 ATP.8: 21 residues within 4Å: Chain K: K.254, R.388, R.391 Chain L: G.222, I.223, G.224, L.226, P.265, G.266, C.267, G.268, K.269, T.270, L.271, N.377, I.409, I.412, H.413, G.441, A.442, E.445 19 PLIP interactions: 4 interactions with chain K, 15 interactions with chain L Salt bridges: K:R.388, K:R.388, K:R.388, K:R.391, L:K.269, L:K.269 Hydrogen bonds: L:G.224, L:G.224, L:G.266, L:C.267, L:G.268, L:K.269, L:T.270, L:T.270, L:L.271, L:N.377, L:H.413, L:E.445, L:E.445 ATP.9: 20 residues within 4Å: Chain L: K.634 Chain M: I.506, M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, S.550, G.551, K.552, T.553, A.554, L.555, I.710, K.711, L.714 20 PLIP interactions: 19 interactions with chain M, 1 interactions with chain L Hydrogen bonds: M:M.507, M:N.508, M:N.508, M:G.509, M:I.511, M:I.511, M:W.513, M:H.549, M:S.550, M:G.551, M:K.552, M:T.553, M:T.553, M:T.553, M:A.554 Salt bridges: M:K.552, M:K.711, M:K.711, M:K.711, L:K.634 ATP.10: 22 residues within 4Å: Chain L: K.254, R.388, R.391 Chain M: G.222, I.223, G.224, G.225, L.226, P.265, G.266, C.267, G.268, K.269, T.270, L.271, N.377, I.409, I.412, H.413, G.441, A.442, E.445 17 PLIP interactions: 13 interactions with chain M, 4 interactions with chain L Hydrogen bonds: M:G.224, M:G.266, M:C.267, M:G.268, M:K.269, M:T.270, M:L.271, M:N.377, M:N.377, M:H.413, M:E.445 Salt bridges: M:K.269, M:K.269, L:R.388, L:R.388, L:R.388, L:R.391 ATP.11: 20 residues within 4Å: Chain M: K.634 Chain N: I.506, M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, S.550, G.551, K.552, T.553, A.554, L.555, I.710, K.711, L.714 20 PLIP interactions: 19 interactions with chain N, 1 interactions with chain M Hydrogen bonds: N:M.507, N:N.508, N:N.508, N:G.509, N:I.511, N:I.511, N:W.513, N:H.549, N:S.550, N:G.551, N:K.552, N:T.553, N:A.554 Water bridges: N:T.648 Salt bridges: N:H.549, N:K.552, N:K.711, N:K.711, N:K.711, M:K.634

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 17 residues within 4Å: Chain I: G.222, I.223, G.224, L.226, P.265, G.266, C.267, G.268, K.269, T.270, L.271, I.409, I.412, H.413, G.441, A.442, E.445 11 PLIP interactions: 11 interactions with chain I Hydrogen bonds: I:G.224, I:G.224, I:G.266, I:C.267, I:G.268, I:K.269, I:T.270, I:L.271, I:H.413, I:E.445 Salt bridges: I:K.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

White, K.I. et al., Pre-fusion AAA+ remodeling of target-SNARE protein complexes enables synaptic transmission. Biorxiv (2024)

Release Date

2025-08-06

Peptides

Synaptosomal-associated protein 25: AC
Syntaxin-1A: BD
Alpha-soluble NSF attachment protein: EFGH
Vesicle-fusing ATPase: IJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

B
H

D
J

E
L

F
M

G
N

H
O

I
A

J
B

K
C

L
D

M
E

N
F

Synaptosomal-associated protein 25

Syntaxin-1A

Alpha-soluble NSF attachment protein

Vesicle-fusing ATPase

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