SMTL ID : 3j95.1

Structure of ADP-bound N-ethylmaleimide sensitive factor determined by single particle cryoelectron microscopy

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 7.60 Å

Oligo State

homo-hexamer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.1: 19 residues within 4Å: Chain B: Y.505, I.506, M.507, N.508, G.509, I.510, I.511, W.513, P.547, P.548, H.549, S.550, G.551, K.552, T.553, A.554, L.555, I.710, K.711 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:M.507, B:N.508, B:G.509, B:I.511, B:W.513, B:H.549, B:K.552, B:T.553, B:A.554 Salt bridges: B:K.552, B:K.711, B:K.711 ADP.2: 14 residues within 4Å: Chain C: I.506, M.507, N.508, G.509, I.510, I.511, W.513, V.517, G.551, K.552, T.553, A.554, L.555, K.711 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:I.506, C:M.507, C:N.508, C:G.509, C:I.510, C:G.551, C:K.552, C:T.553, C:T.553, C:T.553, C:A.554, C:L.555 Salt bridges: C:K.711, C:K.711 ADP.3: 15 residues within 4Å: Chain D: Y.505, I.506, M.507, N.508, G.509, I.510, I.511, V.517, H.549, S.550, G.551, K.552, T.553, A.554, L.555 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:N.508, D:G.509, D:G.509, D:I.511, D:I.511, D:H.549, D:S.550, D:G.551, D:T.553, D:A.554, D:L.555 Salt bridges: D:K.552, D:K.552 ADP.4: 16 residues within 4Å: Chain D: K.634 Chain E: N.508, G.509, I.510, W.513, V.517, P.547, H.549, S.550, G.551, K.552, T.553, A.554, L.555, I.710, K.711 11 PLIP interactions: 10 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:N.508, E:H.549, E:S.550, E:G.551, E:T.553, E:A.554, E:L.555 Salt bridges: E:K.552, E:K.552, E:K.711, D:K.634

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, M. et al., Mechanistic insights into the recycling machine of the SNARE complex. Nature (2015)

Release Date

2015-01-28

Peptides

Vesicle-fusing ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Vesicle-fusing ATPase

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