SMTL ID : 9qxu.1

JetABC DNA loaded state monomer (open)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain G: T.45, G.46, S.47, G.48, K.49, T.50, T.51, D.77, R.78, Y.83, V.87, S.88, G.91, R.1070 13 PLIP interactions: 13 interactions with chain G Hydrogen bonds: G:G.46, G:G.46, G:S.47, G:G.48, G:K.49, G:T.50, G:T.50, G:T.51, G:T.51, G:R.78 Salt bridges: G:K.49, G:R.78 pi-Cation interactions: G:R.78 ADP.2: 19 residues within 4Å: Chain G: G.983, G.984 Chain H: T.45, G.46, S.47, G.48, K.49, T.50, T.51, S.70, D.77, R.78, D.79, S.82, Y.83, V.87, S.88, G.89, R.1070 18 PLIP interactions: 17 interactions with chain H, 1 interactions with chain G Hydrogen bonds: H:G.46, H:S.47, H:G.48, H:K.49, H:T.50, H:T.50, H:T.50, H:T.51, H:T.51, H:S.70, H:R.78, H:S.82, G:G.983 Salt bridges: H:K.49, H:K.49, H:R.78, H:R.78 pi-Cation interactions: H:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roisne-Hamelin, F. et al., Mechanism of DNA entrapment by a loop-extruding Wadjet SMC motor. Mol.Cell (2025)

Release Date

2025-10-01

Peptides

JetB: AB
JetA: CD
JetC: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
J

G
A

H
B

JetB

JetA

JetC

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