SMTL ID : 9qxx.1

JetABC DNA loaded state dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-2-4-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 23 residues within 4Å: Chain D: G.24, G.25, T.45, G.46, S.47, G.48, K.49, T.50, T.51, D.77, R.78, Y.83, V.87, S.88, R.1070 Chain E: S.981, Q.982, G.983, G.984, S.985, G.986, G.987, E.988 22 PLIP interactions: 3 interactions with chain E, 19 interactions with chain D Hydrogen bonds: E:G.983, E:G.986, E:G.987, D:G.25, D:G.46, D:G.46, D:S.47, D:G.48, D:K.49, D:T.50, D:T.50, D:T.50, D:T.51, D:T.51, D:D.77, D:R.78, D:R.78 Salt bridges: D:K.49, D:K.49, D:R.78 pi-Cation interactions: D:R.78, D:R.78 ADP.2: 22 residues within 4Å: Chain D: G.983, S.985, G.986, G.987, E.988 Chain E: G.24, G.25, T.45, G.46, S.47, G.48, K.49, T.50, T.51, D.77, R.78, S.82, Y.83, V.87, S.88, G.89, R.1070 15 PLIP interactions: 13 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:G.46, E:S.47, E:G.48, E:K.49, E:T.50, E:T.51, E:T.51, E:R.78, E:R.78, D:S.985, D:G.986 Salt bridges: E:K.49, E:R.78 pi-Cation interactions: E:R.78, E:R.78 ADP.3: 21 residues within 4Å: Chain I: G.24, G.25, T.45, G.46, S.47, G.48, K.49, T.50, T.51, R.78, V.87, S.88, R.1070 Chain J: S.981, Q.982, G.983, G.984, S.985, G.986, G.987, E.988 20 PLIP interactions: 17 interactions with chain I, 3 interactions with chain J Hydrogen bonds: I:G.46, I:G.46, I:S.47, I:G.48, I:K.49, I:T.50, I:T.50, I:T.50, I:T.51, I:T.51, I:R.78, I:R.78, J:G.983, J:G.984, J:G.986 Salt bridges: I:K.49, I:K.49, I:R.78 pi-Cation interactions: I:R.78, I:R.78 ADP.4: 22 residues within 4Å: Chain I: R.978, G.983, S.985, G.986, G.987, E.988 Chain J: G.24, G.25, T.45, G.46, S.47, G.48, K.49, T.50, T.51, R.78, S.82, Y.83, V.87, S.88, G.89, R.1070 15 PLIP interactions: 13 interactions with chain J, 2 interactions with chain I Hydrogen bonds: J:G.46, J:S.47, J:G.48, J:K.49, J:T.50, J:T.51, J:T.51, J:R.78, J:R.78, I:S.985, I:G.986 Salt bridges: J:K.49, J:R.78 pi-Cation interactions: J:R.78, J:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roisne-Hamelin, F. et al., Mechanism of DNA entrapment by a loop-extruding Wadjet SMC motor. Mol.Cell (2025)

Release Date

2025-10-01

Peptides

JetB: ABFG
JetA: CH
JetC: DEIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

F
H

G
I

C
E

H
J

D
A

E
B

I
F

J
G

JetB

JetA

JetC

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