SMTL ID : 9ria.1

Cryo-EM structure of tomato NRC3-AVRcap1b complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-mer

Ligands

3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: V.150, E.151, D.154, V.155, V.156, F.158, P.185, G.186, L.187, G.188, K.189, T.190, T.191, R.294, L.320, P.350, L.351, L.392 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.151, A:V.156, A:V.156, A:G.186, A:L.187, A:G.188, A:K.189, A:T.190, A:T.191, A:T.191, A:D.266 Salt bridges: A:K.189, A:K.189, A:R.294 ATP.2: 19 residues within 4Å: Chain B: V.150, E.151, D.154, V.155, V.156, F.158, P.185, G.186, L.187, G.188, K.189, T.190, T.191, D.266, R.294, L.320, P.350, L.351, V.354 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:E.151, B:V.156, B:V.156, B:G.186, B:L.187, B:G.188, B:K.189, B:T.190, B:T.190, B:T.191, B:T.191, B:D.266 Salt bridges: B:K.189, B:K.189, B:R.294 ATP.3: 18 residues within 4Å: Chain C: V.150, E.151, V.155, V.156, F.158, G.186, L.187, G.188, K.189, T.190, T.191, D.266, R.294, L.320, P.350, L.351, V.354, L.392 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:E.151, C:E.151, C:V.156, C:V.156, C:G.186, C:L.187, C:G.188, C:K.189, C:T.190, C:T.190, C:T.191, C:T.191, C:D.266 Salt bridges: C:K.189, C:K.189, C:R.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seager, B.A. et al., Cryo-EM structure of tomato NRC3-AVRcap1b complex. To Be Published

Release Date

2025-07-23

Peptides

SlNRC3: ABC
RxLR effector protein PITG_16705: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

SlNRC3

RxLR effector protein PITG_16705

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