SMTL ID : 9rlm.1

HUMAN CYCLOPHILIN D IN COMPLEX WITH INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}'-cyclopentyl-~{N}-[2-[(1~{R},9~{R},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]ethyl]ethanediamide

01.1: 19 residues within 4Å: Chain A: R.54, F.59, M.60, Q.62, G.71, T.72, G.73, G.74, S.80, R.81, A.100, N.101, A.102, T.106, G.108, Q.110, F.112, L.121, H.125 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.59, A:A.100, A:F.112, A:F.112, A:L.121 Hydrogen bonds: A:R.54, A:Q.62, A:Q.62, A:S.80, A:R.81, A:N.101, A:N.101 Water bridges: A:A.100, A:Q.110

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 5 residues within 4Å: Chain A: I.56, P.57, S.58, F.59, W.120 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: V.92, G.93, P.94, H.130 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.130

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: S.146, K.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.147 Water bridges: A:S.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graedler, U., HUMAN CYCLOPHILIN D IN COMPLEX WITH INHIBITOR. To Be Published

Release Date

2025-07-02

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

Related Entries With Identical Sequence