SMTL ID : 9uhr.1

BCCP-BC Conformation of ATP-bound hPCC

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.48 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x BTN: BIOTIN(Covalent)

BTN.1: 8 residues within 4Å: Chain A: T.117, F.145, R.353, V.356, Y.445, D.446, K.694 Ligands: BCT.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.353, A:D.446

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 23 residues within 4Å: Chain A: K.177, I.192, M.217, K.219, G.223, G.224, G.225, G.226, M.229, E.261, K.262, F.263, I.264, H.269, Q.293, E.336, L.338, L.348, E.349, N.351, T.501 Ligands: MG.3, BCT.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.219, A:G.223, A:G.225, A:G.226, A:E.261, A:I.264, A:Q.293, A:Q.293, A:N.351, A:N.351 Salt bridges: A:K.177, A:K.177

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: E.336, E.349 Ligands: ATP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.336, A:E.349

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.4: 8 residues within 4Å: Chain A: K.298, R.353, Q.355, V.356, E.357, R.399 Ligands: BTN.1, ATP.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.298, A:Q.355, A:V.356, A:R.399

1 x 1VU: propionyl Coenzyme A(Non-covalent)

1VU.5: 22 residues within 4Å: Chain B: G.144, G.145, V.170, M.171, I.179, K.182 Chain C: R.54, R.61, F.126, F.129, G.130, S.132, G.162, G.163, A.164, R.165, I.166, L.173, P.199, G.202, G.203, Q.241 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:A.164, C:L.173, B:I.179 Hydrogen bonds: C:S.132, C:G.162, C:I.166 Salt bridges: C:R.54, C:R.61, B:K.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, H. et al., Nanoscale conformational dynamics of human propionyl-CoA carboxylase. Structure (2025)

Release Date

2025-11-19

Peptides

Propionyl-CoA carboxylase alpha chain, mitochondrial: A
Propionyl-CoA carboxylase beta chain, mitochondrial: B
Propionyl-CoA carboxylase beta chain, mitochondrial: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

Propionyl-CoA carboxylase alpha chain, mitochondrial

Propionyl-CoA carboxylase beta chain, mitochondrial

Propionyl-CoA carboxylase beta chain, mitochondrial

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