SMTL ID : 9y7d.1

Cereblon with Golcadomide and Ikaros ZF1-2-3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.287, C.290, C.355, C.358 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.287, A:C.290, A:C.355, A:C.358 ZN.3: 5 residues within 4Å: Chain B: C.66, N.67, C.69, H.82, H.86 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.66, B:C.69, B:H.82, B:H.86

1 x 01: Golcadomide

01.2: 14 residues within 4Å: Chain A: F.66, N.315, P.316, H.317, E.341, H.342, S.343, W.344, W.350, W.364, F.366 Chain B: Q.65, Q.68, G.70 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.316, A:P.316, A:H.342, A:W.344, A:W.350, A:W.350, A:W.364 Hydrogen bonds: A:N.315, A:E.341, A:E.341, A:H.342, A:W.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watson, E.R., Discovery of Golcadomide (CC-99282) as a promising drug candidate for diffuse large B-cell lymphoma. To Be Published

Release Date

2025-10-15

Peptides

Protein cereblon: A
DNA-binding protein Ikaros: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Protein cereblon

DNA-binding protein Ikaros

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