SMTL ID : 5hxb.2 (1 other biounit)

Cereblon in complex with DDB1, CC-885, and GSPT1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: C.287, C.290, C.355, C.358, S.360 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.287, B:C.290, B:C.355, B:C.358

1 x 85C: 1-(3-chloro-4-methylphenyl)-3-({2-[(3S)-2,6-dioxopiperidin-3-yl]-1-oxo-2,3-dihydro-1H-isoindol-5-yl}methyl)urea(Non-covalent)

85C.2: 17 residues within 4Å: Chain B: N.315, P.316, H.317, E.341, H.342, S.343, W.344, W.350, W.364 Chain C: Q.99, V.135, D.136, K.137, K.138, S.139, G.140, K.193 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:N.315, B:P.316, B:W.350, B:W.350, C:K.193 Hydrogen bonds: B:N.315, B:E.341, B:E.341, B:H.342, B:W.344, C:K.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matyskiela, M.E. et al., A novel cereblon modulator recruits GSPT1 to the CRL4(CRBN) ubiquitin ligase. Nature (2016)

Release Date

2016-06-29

Peptides

DNA damage-binding protein 1: A
Protein cereblon: B
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

DNA damage-binding protein 1

Protein cereblon

Eukaryotic peptide chain release factor GTP-binding subunit ERF3A

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