Spike glycoprotein / ACE2_HUMAN hetero-oligomeric complex | P0DTC2, Q9BYF1
Created: Dec. 14, 2022 at 09:32
- Ligands
4 x NAG 4 x 2-acetamido-2-deoxy-beta-D-glucopyranoseNAG.26: 3 residues within 4Å:- Chain A: N.709, G.1131,
- Chain B: D.796
No protein-ligand interaction detected (PLIP)NAG.34: 3 residues within 4Å:- Chain B: N.709, G.1131,
- Chain C: D.796
No protein-ligand interaction detected (PLIP)NAG.41: 4 residues within 4Å:- Chain C: F.338, G.339, F.342, N.343
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.342
- Hydrogen bonds: C:N.343
NAG.42: 3 residues within 4Å:- Chain A: D.796,
- Chain C: N.709, G.1131
No protein-ligand interaction detected (PLIP)
QMEANDisCo Local
QMEAN Z-Scores
Template
7mjm.1
Processed angiotensin-converting enzyme 2, Spike glycoprotein
- Seq Identity
- 99.45%
- Coverage
| Biounit Oligo State | Hetero-pentamer |
| QSQE | - |
| Method | EM |
| Overall Seq Identity | 99.45% |
| Overall Seq Similarity | 0.62 |
| Target | Seq Identity | Seq Similarity | Range | Coverage |
|---|---|---|---|---|
| Processed angiotensin-converting enzyme 2 | 100.00% | 0.63 | DE: 19-614 | 0.74 |
| Spike glycoprotein | 99.17% | 0.61 | ABC: 14-1147 | 0.95 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
Model-Template Alignment
- Ligands
9 x NAG ,5 x NAG-NAG 9 x 2-acetamido-2-deoxy-beta-D-glucopyranoseNAG.21: 3 residues within 4Å:- Chain A: N.331, P.579, Q.580
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.580
NAG.29: 4 residues within 4Å:- Chain B: N.122, N.125, V.127, K.129
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.122, B:K.129
NAG.33: 3 residues within 4Å:- Chain B: F.342, N.343, L.368
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.342, B:L.368
NAG.36: 3 residues within 4Å:- Chain B: H.655, V.656, N.657
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.657
NAG.37: 4 residues within 4Å:- Chain B: N.709, N.710, I.1130, G.1131
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.1130
- Hydrogen bonds: B:N.710
NAG.38: 4 residues within 4Å:- Chain B: N.717, N.919, L.922, Q.1071
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.922
NAG.48: 4 residues within 4Å:- Chain A: A.846, D.848,
- Chain C: N.616, T.618
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.616
NAG.50: 3 residues within 4Å:- Chain C: N.709, I.1130, G.1131
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.709
NAG.52: 3 residues within 4Å:- Chain C: E.132, N.164, N.165
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.164, C:N.165
5 x 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseNAG-NAG.1: 6 residues within 4Å:- Chain A: N.234,
- Chain C: S.459, E.465, Y.473, Q.474,
- Ligand: NAG,NAG.1
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.459, C:Y.473, C:Q.474
NAG-NAG.2: 5 residues within 4Å:- Chain A: N.717, L.922, Q.926, Q.1071,
- Ligand: NAG,NAG.2
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.922
NAG-NAG.7: 4 residues within 4Å:- Chain B: N.1098, H.1101, F.1103,
- Ligand: NAG,NAG.7
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 5 residues within 4Å:- Chain C: N.1098, T.1100, H.1101, F.1103,
- Ligand: NAG,NAG.11
No protein-ligand interaction detected (PLIP)NAG-NAG.13: 4 residues within 4Å:- Chain D: N.53, N.338, Q.340,
- Ligand: NAG,NAG.13
No protein-ligand interaction detected (PLIP)
QMEANDisCo Local
QMEAN Z-Scores
Template
7kj2.1
Angiotensin-converting enzyme 2, Spike glycoprotein
- Seq Identity
- 99.67%
- Coverage
| Biounit Oligo State | Hetero-tetramer |
| QSQE | - |
| Method | EM |
| Overall Seq Identity | 99.67% |
| Overall Seq Similarity | 0.62 |
| Target | Seq Identity | Seq Similarity | Range | Coverage |
|---|---|---|---|---|
| Angiotensin-converting enzyme 2 | 100.00% | 0.63 | D: 21-613 | 0.75 |
| Spike glycoprotein | 99.50% | 0.61 | BAC: 27-1147 | 0.94 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
Model-Template Alignment
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