A0A6C1DYA7 (A0A6C1DYA7_SACPS) Saccharomyces pastorianus (Lager yeast) (Saccharomyces cerevisiae xSaccharomyces eubayanus)
Small nuclear ribonucleoprotein Sm D2 UniProtKBInterProInteractive Modelling
It is possible new templates exist for this target since these models were created.
Available Structures
34 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Yeast U1 snRNP with humanized U1C Zinc-Finger domain |
Heteromer P32605; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q06217; Q07508; Q12330; | 100 | ||||
| S. cerevisiae spliceosomal E complex (UBC4) |
Heteromer P32605; P33203; P34160; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q06217; Q07508; Q08920; Q12330; | 100 | 3×ZN; | |||
| Saccharomyces cerevisiae spliceosomal E complex (ACT1) |
Heteromer P32605; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q06217; Q07508; Q12330; | 100 | 1×ZN; | |||
| Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) |
Heteromer P0C074; P19736; P21372; P32524; P32605; P33203; P39682; P40018; P40204; P40567; P43321; P49955; P53207; P54999; Q00539; Q00916; Q02260; Q02554; Q03776; Q03782; Q04693; Q05900; Q06217; Q06835; Q07350; Q07508; Q08963; Q12330; Q99181; | 100.0 | ||||
| Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom |
Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom |
Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom |
Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Prespliceosome structure provides insight into spliceosome assembly and regulation (map A2) |
Heteromer P0C074; P19736; P32524; P32605; P39682; P40018; P40204; P40567; P43321; P49955; P53207; P54999; Q00539; Q00916; Q02260; Q02554; Q03776; Q03782; Q04693; Q05900; Q06217; Q06835; Q07350; Q07508; Q08963; Q12330; Q99181; | 100.0 | 9×ZN; | |||
| The U1 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) |
Heteromer P32605; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q06217; Q07508; Q12330; | 100.0 | ||||
| Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 angstrom (Part II: U1 … |
Heteromer P23394; P32605; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q06217; Q07508; Q12330; | 100 | 3×ZN; | |||
| Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom |
Heteromer P21374; P25337; P28004; P28320; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×IHP; 1×GTP; 6×MG; 7×ZN; | |||
| Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound |
Heteromer P32639; P33334; P40018; P40204; P43321; P54999; Q02260; Q06217; Q12330; | 100 | 6×MG; 1×K; 1×KGN; 1×GTP; 8×ZN; | |||
| S. cerevisiae U1 snRNP |
Heteromer P32605; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q06217; Q12330; | 100 | ||||
| Structure of a spliceosome remodeled for exon ligation |
Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 3×MG; 2×K; 1×IHP; 1×GTP; 6×ZN; | |||
| Post-catalytic P complex spliceosome with 3' splice site docked |
Heteromer P24384; P25337; P28004; P28320; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×MG; 1×IHP; 1×GTP; 7×ZN; | |||
| yeast activated spliceosome |
Heteromer P0C074; P20095; P25337; P28004; P32639; P33334; P36048; P38241; P40018; P40204; P40565; P43321; P46947; P49955; P53333; P54999; Q02260; Q03654; Q04048; Q04693; Q06217; Q06835; Q07930; Q12046; Q12309; Q12330; Q12417; | 100 | ||||
| S. cerevisiae spliceosomal post-catalytic P complex |
Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 5×MG; 1×IHP; 1×GTP; 7×ZN; | |||
| Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution |
Heteromer P21374; P25337; P28004; P28320; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P53854; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×GTP; 6×MG; 7×ZN; | |||
| Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRN… |
Heteromer P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P39990; P40018; P40070; P40089; P40204; P40565; P40567; P43321; P46947; P47093; P49704; P49955; P53905; P54999; P57743; Q02260; Q02554; Q03338; Q04693; Q06217; Q06406; Q06819; Q06835; Q07350; Q07930; Q08963; Q12330; Q12420; Q99181; | 100.0 | 1×GTP; 1×MG; 6×ZN; | |||
| Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 a… |
Heteromer P25337; P28004; P28320; P32523; P33334; P36048; P36118; P38241; P40018; P40204; P40567; P40968; P43321; P52868; P53131; P53277; P54999; Q02260; Q03654; Q03772; Q04048; Q06091; Q06217; Q06411; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution |
Heteromer P0C074; P20095; P25337; P28004; P32523; P32639; P33334; P36048; P38241; P40018; P40204; P40565; P40968; P43321; P46947; P49955; P53277; P53333; P53769; P54999; Q02260; Q02554; Q02770; Q03375; Q03654; Q03772; Q04048; Q04693; Q06091; Q06217; Q06835; Q07350; Q07930; Q12046; Q12309; Q12330; Q12417; Q99181; | 100 | 1×GTP; 5×MG; 13×ZN; 1×ADP; | |||
| Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom |
Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×IHP; 1×GTP; 6×MG; 6×ZN; | |||
| Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP |
Heteromer P33334; P36048; P40018; P40204; P43321; P54999; Q02260; Q06217; Q12330; | 100 | 1×GTP; | |||
| The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom |
Heteromer P19735; P20053; P32639; P33334; P36048; P38203; P39990; P40018; P40070; P40089; P40204; P43321; P47093; P49704; P53905; P54999; P57743; Q02260; Q03338; Q06217; Q06406; Q06819; Q12330; Q12420; | 100 | 1×GTP; | |||
| Structure of the core of the yeast spliceosome immediately after branching |
Heteromer P21374; P25337; P28004; P28320; P33334; P36048; P38241; P40018; P40204; P40567; P43321; P53854; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 2×MG; 7×ZN; 1×GTP; | |||
| Structure of a spliceosome remodeled for exon ligation |
Heteromer P25337; P28004; P33334; P33411; P36048; P38241; P40018; P40204; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06217; Q12046; Q12309; Q12330; Q12417; | 100 | 3×MG; 2×K; 1×IHP; 1×GTP; 6×ZN; | |||
| Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom |
Heteromer P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P38282; P39990; P40018; P40070; P40089; P40204; P40565; P40567; P43321; P46947; P47093; P49704; P49955; P53905; P54999; P57743; Q00723; Q02260; Q02554; Q03338; Q04693; Q06217; Q06406; Q06819; Q06835; Q07350; Q07930; Q08963; Q12330; Q12368; Q12420; Q99181; | 100.0 | 1×GTP; 1×MG; | |||
| Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution |
Heteromer P15938; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 1×GTP; 6×MG; 6×ZN; | |||
| Head region of the yeast spliceosomal U4/U6.U5 tri-snRNP |
Heteromer P32639; P33334; P40018; P40204; P43321; P54999; Q02260; Q06217; Q12330; Q12420; | 100 | ||||
| Overall structure of the yeast spliceosome immediately after branching. |
Heteromer P15938; P21374; P25337; P28004; P28320; P32523; P32639; P33334; P36048; P38241; P40018; P40204; P40567; P43321; P53854; P54999; Q02260; Q03375; Q03654; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 2×MG; 7×ZN; 1×GTP; | |||
| Structure of a pre-catalytic spliceosome |
Heteromer A6ZYX7; P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P38282; P39990; P40018; P40070; P40089; P40204; P40567; P43321; P47093; P49704; P49955; P53905; P54999; P57743; Q00723; Q02260; Q02554; Q03338; Q04693; Q06217; Q06819; Q06835; Q07350; Q08963; Q12330; Q12368; Q12420; Q99181; | 100 | 1×GTP; 7×ZN; | |||
| The U2 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) |
Heteromer P0C074; P19736; P21372; P32524; P40018; P40204; P40567; P43321; P49955; P54999; Q02260; Q02554; Q04693; Q06217; Q06835; Q07350; Q08963; Q12330; Q99181; | 100 | ||||
| Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP |
Heteromer P19735; P20053; P32639; P33334; P36048; P38203; P39990; P40018; P40070; P40089; P40204; P43321; P47093; P49704; P53905; P54999; P57743; Q02260; Q03338; Q06217; Q06406; Q06819; Q12330; | 100.0 | 1×GTP; 1×M7M; | |||
| Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution |
Heteromer P21374; P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P38302; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P53913; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417; | 100 | 2×MG; 4×K; 2×IHP; 1×GTP; 7×ZN; | |||
1 SWISS-MODEL model
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 7oqc.1.O | monomer | 0.79 | 100.00 | |||