Q06217 (SMD2_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Small nuclear ribonucleoprotein Sm D2 UniProtKBInterProSTRINGInteractive Modelling

110 aa; Sequence (Fasta) Identical sequences: Saccharomyces cerevisiae: G2WJA1; C8ZDN9; A7A1F9; B3RHF7

Sequence Features

 41-104LSM domain, eukaryotic/archaea-type
IPR001163PF01423

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
S. cerevisiae spliceosomal E complex (UBC4) Heteromer
P32605; P33203; P34160; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q07508; Q08920; Q12330;
ZN;6n7p2-108
Saccharomyces cerevisiae spliceosomal E complex (ACT1) Heteromer
P32605; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q07508; Q12330;
ZN;6n7r2-108
Prespliceosome structure provides insight into spliceosome assembly and regulation (map A2) Heteromer
P0C074; P19736; P32524; P32605; P39682; P40018; P40204; P40567; P43321; P49955; P53207; P54999; Q00539; Q00916; Q02260; Q02554; Q03776; Q03782; Q04693; Q05900; Q06835; Q07350; Q07508; Q08963; Q12330; Q99181;
ZN;6g908-108
Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom Heteromer
P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;I6P;ZN;6j6g8-108
Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom Heteromer
P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;I6P;ZN;6j6h8-108
Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom Heteromer
P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;I6P;ZN;6j6n8-108
'Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 angstrom (Part II: ... Heteromer
P23394; P32605; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q07508; Q12330;
ZN;5zwn8-108
Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom Heteromer
P21374; P25337; P28004; P28320; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;I6P;ZN;6j6q8-108
S. cerevisiae U1 snRNP Heteromer
P32605; P39682; P40018; P40204; P43321; P53207; P54999; Q00539; Q00916; Q02260; Q03776; Q03782; Q05900; Q12330;
6n7x13-108
yeast activated spliceosome Heteromer
P0C074; P20095; P25337; P28004; P32639; P33334; P36048; P38241; P40018; P40204; P40565; P43321; P46947; P49955; P53333; P54999; Q02260; Q03654; Q04048; Q04693; Q06835; Q07930; Q12046; Q12309; Q12330; Q12417;
5lqw15-108
Structure of a spliceosome remodeled for exon ligation Heteromer
P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;ZN;MG;I6P;K;5mq015-108
S. cerevisiae spliceosomal post-catalytic P complex Heteromer
P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;ZN;MG;IHP;6bk815-108
Post-catalytic P complex spliceosome with 3' splice site docked Heteromer
P24384; P25337; P28004; P28320; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;I6P;ZN;6exn15-108
Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution Heteromer
P21374; P25337; P28004; P28320; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P53854; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;ZN;5gmk15-108
'Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-s... Heteromer
P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P39990; P40018; P40070; P40089; P40204; P40565; P40567; P43321; P46947; P47093; P49704; P49955; P53905; P54999; P57743; Q02260; Q02554; Q03338; Q04693; Q06406; Q06819; Q06835; Q07350; Q07930; Q08963; Q12330; Q12420; Q99181;
GTP;MG;ZN;5zwm17-110
Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution Heteromer
P0C074; P20095; P25337; P28004; P32523; P32639; P33334; P36048; P38241; P40018; P40204; P40565; P40968; P43321; P46947; P49955; P53277; P53333; P53769; P54999; Q02260; Q02554; Q02770; Q03375; Q03654; Q03772; Q04048; Q04693; Q06091; Q06835; Q07350; Q07930; Q12046; Q12309; Q12330; Q12417; Q99181;
GTP;MG; 13×ZN;ADP;5gm615-108
Head region of the yeast spliceosomal U4/U6.U5 tri-snRNP Heteromer
P32639; P33334; P40018; P40204; P43321; P54999; Q02260; Q12330; Q12420;
5gao15-108
'Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom' Heteromer
P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;I6P;ZN;5ylz15-108
The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom Heteromer
P19735; P20053; P32639; P33334; P36048; P38203; P39990; P40018; P40070; P40089; P40204; P43321; P47093; P49704; P53905; P54999; P57743; Q02260; Q03338; Q06406; Q06819; Q12330; Q12420;
GTP;5gan15-108
'Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.... Heteromer
P25337; P28004; P28320; P32523; P33334; P36048; P36118; P38241; P40018; P40204; P40567; P40968; P43321; P52868; P53131; P53277; P54999; Q02260; Q03654; Q03772; Q04048; Q06091; Q06411; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;I6P;ZN;5y8815-108
Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP Heteromer
P33334; P36048; P40018; P40204; P43321; P54999; Q02260; Q12330;
GTP;5gam15-108
Structure of the core of the yeast spliceosome immediately after branching Heteromer
P21374; P25337; P28004; P28320; P33334; P36048; P38241; P40018; P40204; P40567; P43321; P53854; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;ZN;5lj315-108
Overall structure of the yeast spliceosome immediately after branching. Heteromer
P15938; P21374; P25337; P28004; P28320; P32523; P32639; P33334; P36048; P38241; P40018; P40204; P40567; P43321; P53854; P54999; Q02260; Q03375; Q03654; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;ZN;5lj515-108
Structure of a spliceosome remodeled for exon ligation Heteromer
P25337; P28004; P33334; P33411; P36048; P38241; P40018; P40204; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q12046; Q12309; Q12330; Q12417;
GTP;ZN;MG;I6P;K;5mps15-108
Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom Heteromer
P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P38282; P39990; P40018; P40070; P40089; P40204; P40565; P40567; P43321; P46947; P47093; P49704; P49955; P53905; P54999; P57743; Q00723; Q02260; Q02554; Q03338; Q04693; Q06406; Q06819; Q06835; Q07350; Q07930; Q08963; Q12330; Q12368; Q12420; Q99181;
GTP;MG;5zwo17-110
'Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution' Heteromer
P15938; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q08963; Q12046; Q12309; Q12330; Q12417;
GTP;MG;ZN;5wsg15-108
Structure of a pre-catalytic spliceosome Heteromer
A6ZYX7; P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P38282; P39990; P40018; P40070; P40089; P40204; P40567; P43321; P47093; P49704; P49955; P53905; P54999; P57743; Q00723; Q02260; Q02554; Q03338; Q04693; Q06819; Q06835; Q07350; Q08963; Q12330; Q12368; Q12420; Q99181;
GTP;ZN;5nrl17-108
Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP Heteromer
P19735; P20053; P32639; P33334; P36048; P38203; P39990; P40018; P40070; P40089; P40204; P43321; P47093; P49704; P53905; P54999; P57743; Q02260; Q03338; Q06406; Q06819; Q12330;
GTP;M7M;3jcm20-110