A0R3R7 (LIGD_MYCS2) Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacteriumsmegmatis)

Multifunctional non-homologous end joining protein LigD UniProtKBInterProSTRINGInteractive Modelling

762 aa; Sequence (Fasta)

Sequence Features

Add
 31
 76
 109
 484N6-AMP-lysine intermediate
 136Manganese 1
 136Manganese 2
 138Manganese 1
 138Manganese 2
 226Manganese 2
 330Manganese 3; via pros nitrogen; catalytic; for 3'- phosphoesterase activity
 336Manganese 3; via tele nitrogen; catalytic; for 3'- phosphoesterase activity
 338Manganese 3; catalytic; for 3'-phosphoesterase activity
 486Manganese 4
 616Manganese 4
 372Transition state stabilizer; for 3'-phosphoesterase activity
 18-21
 58-60
 68-72
 88-93
 136-138Substrate; for polymerase activity
 171-177Substrate; for polymerase activity
 233-234
 328-438DNA ligase D, 3'-phosphoesterase domain
IPR014144PF13298
 463-640DNA ligase, ATP-dependent, central
IPR012310PF01068
 660-754DNA ligase, ATP-dependent, C-terminal
IPR012309PF04679

Sequence Alignments

Homology models

Oligo-stateQMEANTemplateRangeSeq id (%)Ligands
monomer -0.25 2iry.1.A7-288
71.33DGT;
Assess
monomer -0.01 6nhz.1.A457-762
68.95MG;
Assess
monomer -2.42 5dmp.1.A325-461
47.79MG;
Assess