B5VK98 | SWISS-MODEL Repository

B5VK98 (B5VK98_YEAS6) Saccharomyces cerevisiae (strain AWRI1631) (Baker's yeast)

60S ribosomal export protein NMD3 UniProtKB InterPro Interactive Modelling

518 aa; Sequence (Fasta) ; 7 identical sequences: Saccharomyces cerevisiae: N1P4U9, G2WFP4, C8Z9W8, P38861, B3LST3; Saccharomyces pastorianus: A0A6C1DSL4; Saccharomyces boulardii: A0A0L8VPI4

It is possible new templates exist for this target since these models were created.

Available Structures

15 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	6n8o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;	9-401	100.0
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Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	6n8m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;	10-402	100
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Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit	6n8n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;	9-401	100.0
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6rzz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38344; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q03862; Q12522; Q12690;	16-404	100	10×ZN;
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6s05 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q06709; Q12522; Q12690;	16-404	100	8×ZN;
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6qik PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;	16-404	100	7×ZN;
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6qtz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;	16-404	100	7×ZN;
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6ri5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;	16-403	100.0	7×ZN;
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Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit	6n8l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P38861; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12522; Q12690;	17-402	100.0
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Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis…	5t62 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q12522; Q12690;	40-401	100.0	160×MG; 2×K; 1×GNP;
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Structure of pre-60S particle bound to DRG1(AFG2).	7z34 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P32794; P33201; P36105; P38061; P38202; P38861; P40078; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12522; Q12690;	153-406	100.0	11×AGS; 1×MG;
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Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit	6n8k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P38861; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12522; Q12690;	153-406	100.0	1×GTP; 1×MG;
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NPC-trapped pre-60S particle	8hfr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P34232; P36105; P38061; P38202; P38861; P39715; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08687; Q12522; Q12690; Q99257;	153-405	100.0	237×MG;
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Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis…	5t6r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690;	151-401	100	86×MG; 3×K;
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Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	5h4p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;	155-402	100
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2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
6qik.1.e	monomer	0.75	16-404	2×ZN;	100.00
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6ri5.1.e	monomer	0.66	16-403	2×ZN;	100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

B5VK98 (B5VK98_YEAS6) Saccharomyces cerevisiae (strain AWRI1631) (Baker's yeast)

60S ribosomal export protein NMD3 UniProtKBInterProInteractive Modelling

Available Structures

15 Experimental Structures

2 SWISS-MODEL models

Alignments

Background

Resolution

60S ribosomal export protein NMD3 UniProtKB InterPro Interactive Modelling