SWISS-MODEL web services will be unavailable between 06:30 CET and 10:00 CET, Thursday, 10th April.

C8Z9W8 (C8Z9W8_YEAS8) Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (Baker'syeast)

60S ribosomal export protein NMD3 UniProtKBInterProInteractive Modelling

518 aa; Sequence (Fasta) ; 7 identical sequences: Saccharomyces cerevisiae: N1P4U9, G2WFP4, P38861, B5VK98, B3LST3; Saccharomyces pastorianus: A0A6C1DSL4; Saccharomyces boulardii: A0A0L8VPI4

Available Structures

15 Experimental Structures

DescriptionPDB IDOligo-stateRangeSeq id (%)Ligands
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
6n8o
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690; 		9-401
100.0
Download
Structure Assessment
Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
6n8m
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02256; Q02326; Q02753; Q12522; Q12690; 		10-402
100
Download
Structure Assessment
Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
6n8n
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690; 		9-401
100.0
Download
Structure Assessment
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
6rzz
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38344; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q03862; Q12522; Q12690; 		16-404
10010×ZN;
Download
Structure Assessment
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
6s05
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q06709; Q12522; Q12690; 		16-404
1008×ZN;
Download
Structure Assessment
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
6qik
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690; 		16-404
1007×ZN;
Download
Structure Assessment
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
6qtz
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690; 		16-404
1007×ZN;
Download
Structure Assessment
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
6ri5
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690; 		16-403
100.07×ZN;
Download
Structure Assessment
Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
6n8l
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P38861; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12522; Q12690; 		17-402
100.0
Download
Structure Assessment
Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis…
5t62
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q12522; Q12690; 		40-401
100.0160×MG; 2×K; 1×GNP;
Download
Structure Assessment
Structure of pre-60S particle bound to DRG1(AFG2).
7z34
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P32794; P33201; P36105; P38061; P38202; P38861; P40078; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12522; Q12690; 		153-406
100.011×AGS; 1×MG;
Download
Structure Assessment
Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
6n8k
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P38861; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12522; Q12690; 		153-406
100.01×GTP; 1×MG;
Download
Structure Assessment
NPC-trapped pre-60S particle
8hfr
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P34232; P36105; P38061; P38202; P38861; P39715; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08687; Q12522; Q12690; Q99257; 		153-405
100.0237×MG;
Download
Structure Assessment
Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis…
5t6r
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690; 		151-401
10086×MG; 3×K;
Download
Structure Assessment
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
5h4p
 Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02326; Q02753; Q06709; Q12522; Q12690; 		155-402
100
Download
Structure Assessment

2 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6rzz.1.jmonomer0.7416-404
2×ZN;100.00
Download
Model report
Structure Assessment
6ri5.1.emonomer0.6616-403
2×ZN;100.00
Download
Model report
Structure Assessment