O15371 | SWISS-MODEL Repository

O15371 (EIF3D_HUMAN) Homo sapiens (Human)

Eukaryotic translation initiation factor 3 subunit D UniProtKB InterPro STRING Interactive Modelling

548 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3); 23 identical sequences

It is possible new templates exist for this target since these models were created.

Available Structures

20 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Cryo-EM structure of the human 43S ribosome with PDCD4	8xxn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; P08708; P08865; P15880; P23396; P25398; P39019; P41567; P42677; P46781; P46782; P46783; P55884; P60228; P60842; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q53EL6; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	2-527	100.0	23×MG; 3×ZN;
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Structure of a human 48S translation initiation complex with eIF4F and eIF4A	8oz0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; P05198; P08708; P08865; P15880; P20042; P23396; P25398; P39019; P41091; P42677; P46781; P46782; P46783; P47813; P55010; P55884; P60228; P60842; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q04637; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	2-527	100.0	2×ZN; 89×MG;
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Structure of a human ABCE1-bound 43S pre-initiation complex - State III	7a09 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer E7ETK0; O00303; O15372; P05198; P08708; P08865; P15880; P20042; P23396; P25398; P39019; P41091; P41567; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60866; P61221; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	2-527	100.0	4×ZN; 2×SF4; 1×ADP; 3×MG; 1×ATP; 1×MET; 1×GTP;
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SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2	6zp4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; P05198; P08708; P08865; P0DTD1; P15880; P20042; P23396; P25398; P39019; P41091; P41567; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	2-527	100.0	4×ZN; 1×GTP; 1×MG;
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SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1	6zon PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; P08708; P08865; P0DTD1; P15880; P23396; P25398; P39019; P42677; P46781; P46782; P46783; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	2-527	100.0	3×ZN;
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Structure of a human ABCE1-bound 43S pre-initiation complex - State II	6zvj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A2R8Y811; B4DVU3; E7ETK0; O00303; O15372; O75822; P08708; P08865; P15880; P23396; P25398; P39019; P41567; P42677; P46781; P46782; P46783; P55884; P60228; P60866; P61221; P61247; P62081; P62241; P62244; P62249; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q9UBQ5; Q9Y262;	2-527	100.0	3×ZN; 2×SF4; 1×ADP; 2×MG; 1×ATP;
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MERS-CoV Nsp1 bound to the human 43S pre-initiation complex	8ppl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4W2DI10; K9N7C7; O00303; O15372; O75821; P05198; P08708; P08865; P15880; P20042; P23396; P25398; P39019; P41091; P41567; P42677; P46781; P46782; P46783; P47813; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	2-524	100.0	4×ZN; 1×GTP; 116×MG; 1×MET; 129×UNX;
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Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced G…	8pj2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; P05198; P08708; P08865; P15880; P23396; P25398; P39019; P41091; P42677; P46781; P46782; P46783; P47813; P55010; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	19-527	100.0	87×MG; 2×ZN;
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Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S…	8pj3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O60841; O75821; P05198; P08708; P08865; P15880; P23396; P25398; P39019; P41091; P42677; P46781; P46782; P46783; P47813; P55010; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	19-527	100.0	1×GTP; 1×NA; 89×MG; 2×ZN;
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Structure of human 48S translation initiation complex in open codon scanning state (48S-1)	8pj1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; P05198; P08708; P08865; P15880; P20042; P23396; P25398; P39019; P41091; P41567; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	19-527	100.0	90×MG; 3×ZN; 1×GTP; 1×MET;
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Structure of human 48S translation initiation complex after eIF5 release (48S-4)	8pj4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O60841; O75821; P05198; P08708; P08865; P15880; P23396; P25398; P39019; P41091; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	19-527	100.0	1×GTP; 1×NA; 89×MG; 2×ZN;
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Structure of a human 48S translational initiation complex	6zmw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; O75822; P05198; P08708; P08865; P15880; P20042; P23396; P25398; P39019; P41091; P41567; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60842; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q04637; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	21-527	100.0	2×ZN; 89×MG;
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Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining …	8pj5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O60841; O75821; P08708; P08865; P15880; P23396; P25398; P39019; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	21-527	100.0	91×MG; 1×GTP; 2×ZN;
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Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-path…	8pj6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; P08708; P08865; P15880; P23396; P25398; P39019; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	21-527	100.0	87×MG; 2×ZN;
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Structure of the human 48S initiation complex in closed state (h48S AUG closed)	7qp7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; P05198; P08708; P08865; P15880; P23396; P25398; P39019; P41091; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	21-527	100.0	2×ZN;
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Structure of the human 48S initiation complex in open state (h48S AUG open)	7qp6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; P05198; P08708; P08865; P15880; P20042; P23396; P25398; P39019; P41091; P41567; P42677; P46781; P46782; P46783; P47813; P55884; P60228; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	21-527	100.0	2×ZN; 2×MG;
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The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex	9bln PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; O75821; P08708; P08865; P15880; P23396; P25398; P39019; P41567; P42677; P46781; P46782; P46783; P55884; P60228; P60842; P60866; P61247; P62081; P62241; P62244; P62249; P62263; P62266; P62269; P62273; P62277; P62280; P62701; P62753; P62841; P62847; P62851; P62854; P62857; P62861; P62945; P62979; P63220; P63244; Q13347; Q14152; Q53EL6; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	21-524	100.0	88×MG; 19×K; 1×SPD; 3×ZN; 1×ACY;
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Structure of a human 48S translational initiation complex - head	6ybs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O75821; P08708; P23396; P25398; P39019; P46782; P46783; P60866; P62249; P62269; P62273; P62841; P62851; P62857; P62979; P63244;	168-527	100	29×MG; 1×ZN;
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Structure of human eIF3 core from closed 48S translation initiation complex	8rg0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; P08708; P08865; P42677; P60228; P61247; P62263; P62277; P62854; P62857; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	19-88	100.0	1×MG; 1×ZN;
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Structure of a human 48S translational initiation complex - eIF3	6ybd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00303; O15372; P08708; P08865; P15880; P42677; P60228; P61247; P62081; P62263; P62277; P62854; P63220; Q14152; Q7L2H7; Q99613; Q9UBQ5; Q9Y262;	21-88	100.0
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2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
8ppl.1.O	monomer	0.70	2-524	100.00
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6zon.1.j	monomer	0.61	2-527	100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

4 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
Isoform 2	8ppl.1.O	monomer	0.74	2-475	94.59
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Isoform 2	6zon.1.j	monomer	0.63	2-478	94.59
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Isoform 3	8ppl.1.O	monomer	0.71	2-509	97.56
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Isoform 3	6zon.1.j	monomer	0.61	2-512	97.56
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O15371 (EIF3D_HUMAN) Homo sapiens (Human)

Eukaryotic translation initiation factor 3 subunit D UniProtKBInterProSTRINGInteractive Modelling

Available Structures

20 Experimental Structures

2 SWISS-MODEL models

4 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Eukaryotic translation initiation factor 3 subunit D UniProtKB InterPro STRING Interactive Modelling