8ppl.1 | SWISS-MODEL Template Library

SMTL ID : 8ppl.1

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

116 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

1 x MET: METHIONINE(Non-covalent)

129 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Schubert, K. et al., Universal features of Nsp1-mediated translational shutdown by coronaviruses. Mol.Cell (2023)

Release Date

2023-10-18

Peptides

Eukaryotic translation initiation factor 3 subunit K: A
Eukaryotic translation initiation factor 3 subunit F: B
Eukaryotic translation initiation factor 3 subunit L: C
Eukaryotic translation initiation factor 3 subunit M: D
Eukaryotic translation initiation factor 3 subunit H: E
Eukaryotic translation initiation factor 3 subunit G: F
Eukaryotic translation initiation factor 1: G
Eukaryotic translation initiation factor 1A, X-chromosomal: H
Eukaryotic translation initiation factor 2 subunit 1: I
Eukaryotic translation initiation factor 2 subunit 2: J
Eukaryotic translation initiation factor 2 subunit 3: K
Eukaryotic translation initiation factor 3 subunit A: L
Eukaryotic translation initiation factor 3 subunit E: M
Eukaryotic translation initiation factor 3 subunit D: O
Eukaryotic translation initiation factor 3 subunit C: P
40S ribosomal protein SA: R
40S ribosomal protein S3a: S
40S ribosomal protein S2: T
40S ribosomal protein S3: U
40S ribosomal protein S4, X isoform: V
40S ribosomal protein S5: W
40S ribosomal protein S6: X
40S ribosomal protein S7: Y
40S ribosomal protein S8: Z
40S ribosomal protein S9: 0
40S ribosomal protein S10: 1
40S ribosomal protein S11: 2
40S ribosomal protein S12: 3
40S ribosomal protein S13: 4
40S ribosomal protein S14: 5
40S ribosomal protein S15: 6
40S ribosomal protein S16: 7
40S ribosomal protein S17: 8
Small ribosomal subunit protein uS13: 9
Small ribosomal subunit protein eS19: a
40S ribosomal protein S20: b
40S ribosomal protein S21: c
40S ribosomal protein S15a: d
40S ribosomal protein S23: e
40S ribosomal protein S24: f
40S ribosomal protein S25: g
40S ribosomal protein S26: h
40S ribosomal protein S27: i
40S ribosomal protein S28: j
40S ribosomal protein S29: k
Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein: l
Ubiquitin-40S ribosomal protein S27a: m
Receptor of activated protein C kinase 1: n
60S ribosomal protein L41: o
Host translation inhibitor nsp1: p

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I3

B
I4

C
I5

D
I6

E
I8

F
Io

G
Ip

H
Iq

I
Ir

J
Is

K
It

L
Iu

M
Iv

O
Ix

P
Iy

R
AA

S
AB

T
AC

U
AD

V
AE

W
AF

X
AG

Y
AH

Z
AI

0
AJ

1
AK

2
AL

3
AM

4
AN

5
AO

6
AP

7
AQ

8
AR

9
AS

a
AT

b
AU

c
AV

d
AW

e
AX

f
AY

g
AZ

h
Aa

i
Ab

j
Ac

k
Ad

l
Ae

m
Af

n
Ag

o
Ah

p
Aj

Eukaryotic translation initiation factor 3 subunit K

Eukaryotic translation initiation factor 3 subunit F

Eukaryotic translation initiation factor 3 subunit L

Eukaryotic translation initiation factor 3 subunit M

Eukaryotic translation initiation factor 3 subunit H

Eukaryotic translation initiation factor 3 subunit G

Eukaryotic translation initiation factor 1

Eukaryotic translation initiation factor 1A, X-chromosomal

Eukaryotic translation initiation factor 2 subunit 1

Eukaryotic translation initiation factor 2 subunit 2

Eukaryotic translation initiation factor 2 subunit 3

Eukaryotic translation initiation factor 3 subunit A

Eukaryotic translation initiation factor 3 subunit E

Eukaryotic translation initiation factor 3 subunit D

Eukaryotic translation initiation factor 3 subunit C

40S ribosomal protein SA

40S ribosomal protein S3a

40S ribosomal protein S2

40S ribosomal protein S3

40S ribosomal protein S4, X isoform

40S ribosomal protein S5

40S ribosomal protein S6

40S ribosomal protein S7

40S ribosomal protein S8

40S ribosomal protein S9

40S ribosomal protein S10

40S ribosomal protein S11

40S ribosomal protein S12

40S ribosomal protein S13

40S ribosomal protein S14

40S ribosomal protein S15

40S ribosomal protein S16

40S ribosomal protein S17

Small ribosomal subunit protein uS13

Small ribosomal subunit protein eS19

40S ribosomal protein S20

40S ribosomal protein S21

40S ribosomal protein S15a

40S ribosomal protein S23

40S ribosomal protein S24

40S ribosomal protein S25

40S ribosomal protein S26

40S ribosomal protein S27

40S ribosomal protein S28

40S ribosomal protein S29

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Ubiquitin-40S ribosomal protein S27a

Receptor of activated protein C kinase 1

60S ribosomal protein L41

Host translation inhibitor nsp1

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3j7o.1 | 3j7q.1 | 4cxg.1 | 4cxh.1 | 4d5l.1 | 4d5y.1 | 4d61.1 | 4d67.1 | 4kzx.1 | 4kzy.1 | 4kzz.1 | 4v5z.1 | 4v5z.3 | 4v5z.6 | 4v5z.7 | 4v5z.8 | 4v5z.9 | 4v5z.10 | 4v5z.11 | 4v5z.12 | 4v5z.13 | 4v5z.15 | 4v5z.16 | 5a2q.1 | 5a5t.1 | 5aj0.40 | 5aj0.46 | 5aj0.47 | 5aj0.48 | 5aj0.49 more...