O87880 | SWISS-MODEL Repository

O87880 (VATD_THET8) Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

V-type ATP synthase subunit D UniProtKB InterPro Interactive Modelling

223 aa; Sequence (Fasta) ; 2 identical sequences: Thermus thermophilus: A0A510HRT6, Q72J74

Available Structures

40 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of V1-ATPase at 3.9 angstrom resolution	3w3a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74903; Q56403; Q56404;	2-211	100	2×ADP;
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Thermus thermophilus V/A-ATPase bound to VH dAbs	5tsj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	2-211	100
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Thermus thermophilus V/A-ATPase, conformation 1	5gar PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer H9ZQR4; P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT7;	2-211	100
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Thermus thermophilus V/A-ATPase, conformation 2	5gas PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer H9ZQR4; P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT7;	2-211	100
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V/A-type ATPase/synthase from Thermus thermophilus, rotational state 1	5y5x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	2-211	100	2×ADP;
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V/A-type ATPase/synthase from Thermus thermophilus, peripheral domain, rotational state 1	5y5y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5;	2-211	100	2×ADP;
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V/A-type ATPase/synthase from Thermus thermophilus, rotational state 2	5y5z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	2-211	100	2×ADP;
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Thermus thermophilus V/A-type ATPase/synthase, rotational state 1L	6r0z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	3-212	100	1×MG; 2×ADP;
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V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3.	5y60 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	2-211	100	2×ADP;
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V/A-ATPase from Thermus thermophilus, the soluble domain, including V1, d, two EG stalks, and N-ter…	6ly8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74903; Q56403; Q56404;	2-211	100	1×ADP;
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Thermus thermophilus V/A-type ATPase/synthase, rotational state 1	6qum PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	3-209	100	1×MG; 2×ADP;
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Thermus thermophilus V/A-type ATPase/synthase, rotational state 2	6r0w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	3-209	100	1×MG; 2×ADP;
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Thermus thermophilus V/A-type ATPase/synthase, rotational state 1R	6r10 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	3-209	100	1×MG; 2×ADP;
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V1EG of V/A-ATPase from Thermus thermophilus, state1-1	7vai PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100
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Nucleotide-free V1EG domain of V/A-ATPase from Thermus thermophilus, state1-2	7vaj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100
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Nucleotide-free V1EG domain of V/A-ATPase from Thermus thermophilus, state2	7vak PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100
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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state1-1	7val PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×PO4; 2×ATP;
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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state1-2	7vam PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×PO4; 2×ATP;
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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state2-1	7van PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×PO4; 2×ATP;
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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state2-2	7vao PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×PO4; 2×ATP;
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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state2-2	7vap PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×PO4; 2×ATP;
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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state3-2	7vaq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×PO4; 2×ATP;
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V1EG domain of V/A-ATPase from Thermus thermophilus at low ATP concentration, state1-1	7var PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×ATP;
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V1EG domain of V/A-ATPase from Thermus thermophilus at low ATP concentration, state1-2	7vas PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×ATP;
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V1EG of V/A-ATPase from Thermus thermophilus at low ATP concentration, state2-1	7vat PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×ATP;
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V1EG of V/A-ATPase from Thermus thermophilus at low ATP concentration, state2-2	7vau PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×ATP;
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1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus	8gxu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	2×SO4; 1×ATP;
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V1EG of V/A-ATPase from Thermus thermophilus at low ATP concentration, state3	7vav PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 1×ATP;
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V1EG domain of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state1-1	7vaw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	2×MG; 1×ADP; 2×AGS;
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2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus	8gxw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×SO4; 2×ATP; 1×MG;
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V1EG of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state1-2	7vax PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	2×MG; 1×ADP; 2×AGS;
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Thermus thermophilus V/A-type ATPase/synthase, rotational state 3	6r0y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5; Q5SIT6; Q5SIT7;	3-208	100	1×MG; 2×ADP;
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3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus.	8gxx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×ADP; 2×MG; 2×ATP;
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V1EG domain of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state2	7vay PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	2×MG; 1×ADP; 2×AGS;
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2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus.	8gxy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	2×SO4;
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1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus.	8gxz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	1×SO4; 1×ATP; 1×MG;
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V1EG domain of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state3	7vb0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74903; Q56403; Q56404; Q5SIT5;	4-209	100	2×MG; 1×ADP; 2×AGS;
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Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic …	3a5c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74903; Q56403; Q56404;	1-205	100.0	2×ADP;
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Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic …	3a5d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74903; Q56403; Q56404;	1-205	100.0
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Fitted atomic models of Thermus thermophilus V-ATPase subunits into cryo-EM map	3j0j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P74901; P74902; P74903; Q56403; Q56404; Q5SIT5;	1-205	100.0	2×ADP;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	6r0z.1.G	monomer	0.76	3-212		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

O87880 (VATD_THET8) Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

V-type ATP synthase subunit D UniProtKBInterProInteractive Modelling

Available Structures

40 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

V-type ATP synthase subunit D UniProtKB InterPro Interactive Modelling