SMTL ID : 5y5x.1

V/A-type ATPase/synthase from Thermus thermophilus, rotational state 1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-2-2-1-1-12-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 9 residues within 4Å: Chain A: G.231, S.232, G.233, K.234, T.235, V.236, P.420, Q.497, A.499 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.231, A:S.232, A:G.233, A:K.234, A:T.235, A:V.236, A:A.499 ADP.2: 11 residues within 4Å: Chain C: F.230, G.231, S.232, G.233, K.234, T.235, V.236, F.419 Chain E: Y.331, S.359, R.360 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:G.231, C:T.235, C:V.236, E:Y.331, E:R.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakanishi, A. et al., Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus. Nat Commun (2018)

Release Date

2018-01-17

Peptides

V-type ATP synthase alpha chain: ABC
V-type ATP synthase beta chain: DEF
V-type ATP synthase subunit D: G
V-type ATP synthase subunit F: H
V-type ATP synthase, subunit (VAPC-THERM): IK
V-type ATP synthase subunit E: JL
V-type ATP synthase subunit C: M
V-type ATP synthase subunit I: N
V-type ATP synthase, subunit K: OPQRSTUVWXYZ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

K
K

J
J

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

Membrane

We predict this structure to be a membrane protein.
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V-type ATP synthase alpha chain

V-type ATP synthase beta chain

V-type ATP synthase subunit D

V-type ATP synthase subunit F

V-type ATP synthase, subunit (VAPC-THERM)

V-type ATP synthase subunit E

V-type ATP synthase subunit C

V-type ATP synthase subunit I

V-type ATP synthase, subunit K

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