SMTL ID : 6ly8.1

V/A-ATPase from Thermus thermophilus, the soluble domain, including V1, d, two EG stalks, and N-terminal domain of a-subunit.

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.1: 14 residues within 4Å: Chain A: M.209, F.230, G.231, S.232, G.233, K.234, T.235, V.236, F.419, Q.497, N.498, A.499 Chain F: R.360, N.363 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain F Hydrogen bonds: A:P.229, A:G.231, A:S.232, A:K.234, A:T.235, A:T.235, A:V.236, A:Q.497, A:A.499, F:N.363 Salt bridges: A:K.234, F:R.360, F:R.360 pi-Stacking: A:F.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kishikawa, J.I. et al., Mechanical inhibition of isolated V o from V/A-ATPase for proton conductance. Elife (2020)

Release Date

2020-09-09

Peptides

V-type ATP synthase alpha chain: ABC
V-type ATP synthase beta chain: DEF
V-type ATP synthase subunit D: G
V-type ATP synthase subunit F: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

V-type ATP synthase alpha chain

V-type ATP synthase beta chain

V-type ATP synthase subunit D

V-type ATP synthase subunit F

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