O94742 (SEM1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

26S proteasome complex subunit SEM1 UniProtKBInterProSTRINGInteractive Modelling

89 aa; Sequence (Fasta) ; 8 identical sequences: Saccharomyces cerevisiae: N1P799, G2WBA0, C7GMH3, A0A6A5Q1X7, A6ZYW2, B3LFT9; Saccharomyces pastorianus: A0A6C1DRP8; Saccharomyces boulardii: A0A0L8VUA8

Available Structures

34 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
26S proteasome, s4 state
6fvw
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		1-89
4×ATP; 6×MG; 2×ADP;
Assess
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state
7qo5
 Heteromer
O13563; P0CG47; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		1-89
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state
7qo6
 Heteromer
A0A6A5PTH4; A0A6A5PTW0; A0A6A5PUA1; A0A6A5PV22; A0A6A5PWR8; A0A6A5PWS2; A0A6A5PXC6; A0A6A5PXN2; A0A6A5PXS0; A0A6A5PYC9; A0A6A5PYF7; A0A6A5PYX7; A0A6A5Q0P3; A0A6A5Q0W2; A0A6A5Q273; A0A6A5Q2N6; A0A6A5Q382; A0A6A5Q449; A0A6A5Q4M4; A0A6A5Q5W3; A0A6A5Q672; A0A6A5Q8D3; A0A6L0YA22; A0A6L0YP93; A0A6L1AUZ6; A0A6L1BIF8; A0A7I9BXZ7; J3QS39; P30657; P32565; P38624; P38764; Q04062; Q08723; 		1-89
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome, s2 state
6fvu
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		1-89
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome, s3 state
6fvv
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		1-89
2×ADP; 6×MG; 4×ATP;
Assess
26S proteasome, s1 state
6fvt
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		1-89
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome, s5 state
6fvx
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		1-89
5×ATP; 6×MG; 1×ADP;
Assess
Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)
7qo3
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P38624; P38764; P38886; P40016; P40302; P40303; P43588; Q04062; Q06103; Q08723; Q12250; Q12377; 		1-89
Assess
26S proteasome, s6 state
6fvy
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		1-89
4×ATP; 6×MG; 2×ADP;
Assess
26S proteasome in presence of ATP (s2)
5mpe
 Heteromer
O13563; P32496; P32565; P38764; P38886; P40016; P43588; Q04062; Q06103; Q08723; Q12250; Q12377; 		17-89
Assess
26S proteasome in presence of BeFx (s4)
5mpc
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		17-89
4×ATP; 6×MG; 2×ADP;
Assess
26S proteasome in presence of AMP-PNP (s3)
5mpb
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		17-89
5×ANP; 6×MG; 1×ADP;
Assess
26S proteasome in presence of ATP (s1)
5mpd
 Heteromer
O13563; P32496; P32565; P38764; P38886; P40016; P43588; Q04062; Q06103; Q08723; Q12250; Q12377; 		17-89
Assess
Sac3:Thp1:Sem1 complex
3t5v
 Heteromer
P46674; Q08231; 		23-89
Assess
TREX2 M-region
5ubp
 Heteromer
B3LGC5; Q08231; 		27-89
Assess
Structure of the Saccharomyces cerevisiae TREX-2 complex
5l3t
 Heteromer
P46674; Q08231; 		27-89
Assess
Structure of the Saccharomyces cerevisiae TREX-2 complex
5g5p
 Heteromer
P46674; Q08231; 		27-89
Assess
Crystal structure of Sac3/Thp1/Sem1
4trq
 Heteromer
P46674; Q08231; 		30-89
1×SO4;
Assess
Selenomethionine-substituted structure of S. cerevisiae Csn12 in complex with Thp3 and Sem1
7ewf
 Heteromer
P47130; Q12049; 		32-89
Assess
Native crystal structure of S. cerevisiae Csn12 in complex with Thp3 and Sem1
7ewm
 Heteromer
P47130; Q12049; 		32-89
Assess
Structure of the yeast 26S proteasome lid sub-complex
3jck
 Heteromer
P32496; P40016; P43588; Q04062; Q06103; Q08723; Q12250; Q12377; 		31-88
1×ZN;
Assess
Structure of yeast 26S proteasome in M2 state derived from Titan dataset
3jcp
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		56-89
Assess
Structure of yeast 26S proteasome in M1 state derived from Titan dataset
3jco
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		56-89
Assess
Yeast proteasome in resting state (C1-a)
6j2x
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		62-88
Assess
Yeast proteasome in translocation competent state (C3-a)
6j2c
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		62-88
Assess
yeast proteasome in Ub-engaged state (C2)
6j30
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		62-88
Assess
Yeast proteasome in Ub-accepted state (C1-b)
6j2q
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		62-88
Assess
The resting state of yeast proteasome
5wvi
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		62-88
Assess
yeast proteasome in substrate-processing state (C3-b)
6j2n
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		62-88
Assess
Yeast proteasome-ADP-AlFx
5wvk
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		71-89
Assess
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…
4cr2
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		71-89
Assess
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…
4cr4
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		71-89
Assess
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…
4cr3
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		71-89
Assess
Structure of the 26S proteasome-Ubp6 complex
5a5b
 Heteromer
O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P43593; P53549; P62987; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		71-89
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6fvu.1.6monomer0.551-89
100.00
Assess