O94742 | SWISS-MODEL Repository

O94742 (SEM1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

26S proteasome complex subunit SEM1 UniProtKB InterPro STRING Interactive Modelling

89 aa; Sequence (Fasta) ; 7 identical sequences: Saccharomyces cerevisiae: N1P799, G2WBA0, C7GMH3, A6ZYW2, B3LFT9; Saccharomyces pastorianus: A0A6C1DRP8; Saccharomyces boulardii: A0A0L8VUA8

It is possible new templates exist for this target since these models were created.

Available Structures

37 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)	7qo3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P38624; P38764; P38886; P40016; P40302; P40303; P43588; Q04062; Q06103; Q08723; Q12250; Q12377;	1-89	100
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26S proteasome, s2 state	6fvu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	1-89	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome, s4 state	6fvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	1-89	100	4×ATP; 6×MG; 2×ADP;
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26S proteasome, s6 state	6fvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	1-89	100	4×ATP; 6×MG; 2×ADP;
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26S proteasome, s1 state	6fvt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	1-89	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome, s3 state	6fvv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	1-89	100	2×ADP; 6×MG; 4×ATP;
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26S proteasome, s5 state	6fvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	1-89	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state	7qo5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P0CG47; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	1-89	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state	7qo6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer J3QS39; P30657; P32565; P38624; P38764; Q04062; Q08723;	1-89	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome in presence of BeFx (s4)	5mpc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	17-89	100.0	4×ATP; 6×MG; 2×ADP;
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26S proteasome in presence of ATP (s2)	5mpe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P32496; P32565; P38764; P38886; P40016; P43588; Q04062; Q06103; Q08723; Q12250; Q12377;	17-89	100.0
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26S proteasome in presence of ATP (s1)	5mpd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P32496; P32565; P38764; P38886; P40016; P43588; Q04062; Q06103; Q08723; Q12250; Q12377;	17-89	100.0
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26S proteasome in presence of AMP-PNP (s3)	5mpb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	17-89	100.0	5×ANP; 6×MG; 1×ADP;
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Sac3:Thp1:Sem1 complex	3t5v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P46674; Q08231;	23-89	100.0
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TREX2 M-region	5ubp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer B3LGC5; Q08231;	27-89	100.0
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Structure of the Saccharomyces cerevisiae TREX-2 complex	5l3t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P46674; Q08231;	27-89	100.0
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Structure of the Saccharomyces cerevisiae TREX-2 complex	5g5p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P46674; Q08231;	27-89	100.0
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Crystal structure of Sac3/Thp1/Sem1	4trq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P46674; Q08231;	30-89	100.0	1×SO4;
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Selenomethionine-substituted structure of S. cerevisiae Csn12 in complex with Thp3 and Sem1	7ewf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P47130; Q12049;	32-89	100
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Native crystal structure of S. cerevisiae Csn12 in complex with Thp3 and Sem1	7ewm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P47130; Q12049;	32-89	100
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Structure of the yeast 26S proteasome lid sub-complex	3jck PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32496; P40016; P43588; Q04062; Q06103; Q08723; Q12250; Q12377;	31-88	100.0	1×ZN;
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Cryo-EM structure of the TREX-2 complex in association with Sub2	8u8e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P46674; Q07478; Q08231;	31-88	100.0
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Crystal structure of the TREX-2 complex in complex with the N-terminal motif of Sub2	8u8c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P46674; Q07478; Q08231;	32-88	100.0
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Cryo-EM structure of the TREX-2 complex in complex with the N-terminal motif of Sub2	8u8d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P46674; Q07478; Q08231;	32-88	100.0
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Structure of yeast 26S proteasome in M1 state derived from Titan dataset	3jco PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	56-89	100
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Structure of yeast 26S proteasome in M2 state derived from Titan dataset	3jcp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	56-89	100
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The resting state of yeast proteasome	5wvi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	62-88	100
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yeast proteasome in Ub-engaged state (C2)	6j30 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	62-88	100
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Yeast proteasome in resting state (C1-a)	6j2x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	62-88	100
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yeast proteasome in substrate-processing state (C3-b)	6j2n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	62-88	100
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Yeast proteasome in Ub-accepted state (C1-b)	6j2q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	62-88	100
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Yeast proteasome in translocation competent state (C3-a)	6j2c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	62-88	100
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Yeast proteasome-ADP-AlFx	5wvk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	71-89	100
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Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…	4cr2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	71-89	100
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Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…	4cr4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	71-89	100
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Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…	4cr3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	71-89	100
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Structure of the 26S proteasome-Ubp6 complex	5a5b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P43593; P53549; P62987; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	71-89	100
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7qo6.1.6	monomer	0.54	1-89		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

O94742 (SEM1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

26S proteasome complex subunit SEM1 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

37 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

26S proteasome complex subunit SEM1 UniProtKB InterPro STRING Interactive Modelling