O95243 | SWISS-MODEL Repository

O95243 (MBD4_HUMAN) Homo sapiens (Human)

Methyl-CpG-binding domain protein 4 UniProtKB InterPro STRING Interactive Modelling

580 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 5; Isoform 6)

Available Structures

18 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Human MBD4 glycosylase domain bound to DNA containing substrate analog 2'-deoxy-pseudouridine	7kz0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	437-580	100	3×GOL; 1×K;
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Human MBD4 glycosylase domain bound to DNA containing oxacarbenium-ion analog 1-aza-2'-deoxyribose	7kzg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	437-580	100	4×GOL; 1×PEG; 1×EDO; 1×NA; 1×CL;
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Human MBD4 glycosylase domain bound to DNA containing an abasic site	7kz1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	436-578	100	1×GOL; 1×EDO; 1×NA;
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Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding do…	4ofa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-579	99.3	1×MG;
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Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding do…	4ofe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-579	98.59	1×MG;
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Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding do…	4ofh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-578	99.29	1×MG;
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Structure of wild-type human MBD4 bound to a G:T mismatch	5chz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-577	100	1×MG;
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Structure of the glycosylase domain of MBD4	4e9e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	437-576	100
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Crystal Structure of MBD4 Catalytic Domain Bound to Abasic DNA	4dk9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-577	100	1×K;
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Structure of the glycosylase domain of MBD4 bound to AP site containing DNA	4e9f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	437-574	100	1×EDO;
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Crystal structure of WT hMBD4 complexed with T:G mismatch DNA	6vjw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-575	100
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structure of the glycosylase domain of MBD4 bound to thymine containing DNA	4e9g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-575	99.28
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The C-terminal glycosylase domain of human MBD4	3iho PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	437-574	100
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Structure of the glycosylase domain of MBD4 bound to 5hmU-containing DNA	4ea4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-574	99.27
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structure of glycosylase domain of MBD4 bound to 5hmU containing DNA	4e9h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	438-574	99.27
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Structure of the glycoslyase domain of MBD4 bound to a 5hmU containing DNA	4ea5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	439-574	99.27
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Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA	2moe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	80-148	100
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Crystal structure MBD4 MBD domain in complex with methylated CpG DNA	4lg7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	83-145	100	11×UNX;
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3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
7kz0.1.A	monomer	0.85	437-580	100.00
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3vyb.1.A	monomer	0.65	85-147	83.82
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1ub1.1.A	monomer	0.52	85-154	56.52
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

10 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
Isoform 2	7kz0.1.A	monomer	0.84	431-574	100.00
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Isoform 2	3vyb.1.A	monomer	0.66	85-147	83.82
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Isoform 2	1ub1.1.A	monomer	0.52	85-154	56.52
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Isoform 3	7kz1.1.A	monomer	0.79	436-540	98.25
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Isoform 3	3vyb.1.A	monomer	0.69	85-147	83.82
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Isoform 3	1ub1.1.A	monomer	0.52	85-154	56.52
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Isoform 5	7kz1.1.A	monomer	0.78	436-562	95.59
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Isoform 5	3vyb.1.A	monomer	0.68	85-147	83.82
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Isoform 5	1ub1.1.A	monomer	0.52	85-154	56.52
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Isoform 6	7kz0.1.A	monomer	0.87	119-262	100.00
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O95243 (MBD4_HUMAN) Homo sapiens (Human)

Methyl-CpG-binding domain protein 4 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

18 Experimental Structures

3 SWISS-MODEL models

10 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Methyl-CpG-binding domain protein 4 UniProtKB InterPro STRING Interactive Modelling