P05317 | SWISS-MODEL Repository

P05317 (RLA0_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Large ribosomal subunit protein uL10 UniProtKB InterPro STRING Interactive Modelling

312 aa; Sequence (Fasta) ; 3 identical sequences: Saccharomyces cerevisiae: N1NYM9, G2WJF8; Saccharomyces pastorianus: A0A6C1DXN2

It is possible new templates exist for this target since these models were created.

Available Structures

18 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1	4v8t SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690;	3-221	4×ZN;
Assess
Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners	3j16 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05738; P0CX31; P0CX33; P0CX37; P0CX41; P0CX53; P33309; Q03195;	1-199	1×MG; 1×ATP; 2×SF4;
Assess
Yeast RQC complex in state F	8agt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	3-199	13×MG; 7×ZN;
Assess
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)	6r84 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P40024; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	3-199	1×ZN;
Assess
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	6r87 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	3-199	1×ZN;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	8agx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	3-199	13×MG; 7×ZN; 1×SPD;
Assess
Yeast Vms1-60S ribosomal subunit complex (post-state)	6r86 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	3-199	1×ZN;
Assess
Yeast RQC complex in state E	8agu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX54; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	3-199	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state G	8aaf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	3-199	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state H	8agv SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX54; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	3-199	13×MG; 7×ZN;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	8agz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	3-199	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state D	8agw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	3-199	13×MG; 7×ZN; 1×SPD;
Assess
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	5apn SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38344; P41805; P49166; P49167; P87262; Q02326; Q02753; Q03862; Q12690;	3-198	280×MG; 6×ZN;
Assess
Subunit joining exposes nascent pre-40S rRNA for processing and quality control	6oig SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690; Q3E757;	3-198
Assess
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	5apo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q03862; Q12690;	3-198	280×MG; 6×ZN;
Assess
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	7top SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A6A5PUL8; A0A6A5PUZ5; A0A6A5PWR1; A0A6A5PY83; A0A6A5Q0W8; A0A6A5Q1M9; A0A6A5Q3W0; A0A6A5Q627; A0A6A5Q7I9; A7H9Z6; P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P14120; P17076; P26784; P36105; P49166; P87262; Q02326; Q02753; Q12690;	54-60	4×ZN;
Assess
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	7too SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A6A5PUL8; A0A6A5PUZ5; A0A6A5PWR1; A0A6A5PY83; A0A6A5Q0W8; A0A6A5Q1M9; A0A6A5Q3W0; A0A6A5Q627; A0A6A5Q7I9; P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P14120; P17076; P26784; P36105; P49166; P87262; Q02326; Q02753; Q12690;	54-60	4×ZN;
Assess
Cryo-EM structure of Shiga toxin 2 in complex with the native ribosomal P-stalk	7u6v SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7UQX3; Q7DI68;	307-312
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
7oyd.75.A	monomer	0.67	3-198		54.17
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P05317 (RLA0_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Large ribosomal subunit protein uL10 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

18 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Large ribosomal subunit protein uL10 UniProtKB InterPro STRING Interactive Modelling