P0C6Y3 (R1AB_IBVM) Avian infectious bronchitis virus (strain M41) (IBV)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

6631 aa; Sequence (Fasta)

Molecule Processing
Non-structural protein 2
Non-structural protein 3
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
RNA-directed RNA polymerase
Helicase
Exoribonuclease
Uridylate-specific endoribonuclease
Putative 2'-O-methyl transferase

Sequence Features

Add
 1276For PL-PRO activity
 1439For PL-PRO activity
 2822For 3CL-PRO activity
 2924For 3CL-PRO activity
 4875Zinc 1
 4878Zinc 1
 4886Zinc 2
 4889Zinc 1
 4896Zinc 1
 4899Zinc 2
 4903Zinc 2
 4909Zinc 2
 4920Zinc 3
 4925Zinc 3
 4942Zinc 3
 4945Zinc 3
 807L -> S
 1618S -> F
 1739S -> A
 2631M -> L
 2774S -> P
 4230D -> G
 4692S -> P
 4859Y -> C
 5104S -> P
 6033V -> A
 6080T -> M
 6314A -> T
 1723-1743Helical
 1753-1773Helical
 1846-1866Helical
 1889-1909Helical
 2283-2303Helical
 2373-2393Helical
 2562-2582Helical
 2591-2611Helical
 2614-2634Helical
 2646-2666Helical
 3103-3123Helical
 3124-3144Helical
 3154-3174Helical
 3191-3211Helical
 3222-3242Helical
 3260-3280Helical
 3299-3319Helical
 1355-1392C4-type
 3860-3880
 3906-3919
 5152-5159ATP
 673-674Cleavage; by PL-PRO
 2267-2268Cleavage; by PL-PRO
 2781-2782Cleavage; by 3CL-PRO
 3088-3089Cleavage; by 3CL-PRO
 3381-3382Cleavage; by 3CL-PRO
 3464-3465Cleavage; by 3CL-PRO
 3674-3675Cleavage; by 3CL-PRO
 3785-3786Cleavage; by 3CL-PRO
 3930-3931Cleavage; by 3CL-PRO
 4870-4871Cleavage; by 3CL-PRO
 5470-5471Cleavage; by 3CL-PRO
 5991-5992Cleavage; by 3CL-PRO
 6329-6330Cleavage; by 3CL-PRO
 14-371Non-structural protein 2, gammacoronavirus
IPR040795PF17896
 1042-1147Macro domain
IPR002589PF01661
 1176-1477Peptidase C16, coronavirus
IPR013016PF08715
 1785-2250Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2306-2658Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 2686-2778Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 2810-3098Peptidase C30, coronavirus
IPR008740PF05409
 3115-3381Non-structural protein 6, coronavirus
IPR043610PF19213
 3382-3464Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3465-3667Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 3675-3785Non-structural protein NSP9, coronavirus
IPR014822PF08710
 3798-3920RNA synthesis protein NSP10, coronavirus
IPR018995PF09401
 3949-4305RNA polymerase, N-terminal, coronaviral
IPR009469PF06478
 4341-4826RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680
 5149-5446(+) RNA virus helicase core domain
IPR027351PF01443
 5471-5988Non-structural protein 14, coronavirus
IPR009466PF06471
 5992-6052Coronavirus replicase NSP15, N-terminal oligomerisation
IPR043606PF19219
 6062-6151Coronavirus replicase NSP15, middle domain
IPR043608PF19216
 6173-6327NendoU domain, nidovirus
IPR043609PF19215
 6330-6630Non-structural protein NSP16, coronavirus-like
IPR009461PF06460

Sequence Alignments

Non-structural protein 2 1-673; PRO_0000283889

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.863ld1.1.A13-371
99.16
Assess

Non-structural protein 3 674-2267; PRO_0000283890

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-0.974x2z.1.A1179-1479
89.03
Assess
monomer ZN;-1.455bz0.1.A1232-1479
88.71
Assess

3C-like proteinase 2782-3088; PRO_0000283892

DescriptionOligo-stateLigandsStructureRange
Crystal structure of infectious bronchitis virus (IBV) main proteasehomo-2-mer 2q6d 2782-3087
Assess

Non-structural protein 9 3675-3785; PRO_0000283896

DescriptionOligo-stateLigandsStructureRange
Infectious bronchitis virus nsp9homo-2-mer PEG;GOL;5c94 3675-3785
Assess

RNA-directed RNA polymerase 3931-4870; PRO_0000283898

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-2.057c2k.1.A3940-4867
62.95
Assess

Helicase 4871-5470; PRO_0000283899

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-4.336jyt.1.A4873-5465
59.43
Assess

Exoribonuclease 5471-5991; PRO_0000283900

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-3.935nfy.1.A5472-5989
53.09
Assess

Uridylate-specific endoribonuclease 5992-6329; PRO_0000283901

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -3.355yvd.1.A5993-6327
37.54
Assess