P0C6Y3 (R1AB_IBVM) Avian infectious bronchitis virus (strain M41) (IBV)
Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling
6631 aa; Sequence (Fasta)
Molecule Processing
| Non-structural protein 2 | |
| Non-structural protein 3 | |
| Non-structural protein 4 | |
| 3C-like proteinase | |
| Non-structural protein 6 | |
| Non-structural protein 7 | |
| Non-structural protein 8 | |
| Non-structural protein 9 | |
| Non-structural protein 10 | |
| RNA-directed RNA polymerase | |
| Helicase | |
| Exoribonuclease | |
| Uridylate-specific endoribonuclease | |
| Putative 2'-O-methyl transferase |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1276 | For PL-PRO activity | ||
| 1439 | For PL-PRO activity | ||
| 2822 | For 3CL-PRO activity | ||
| 2924 | For 3CL-PRO activity | ||
| 4875 | Zinc 1 | ||
| 4878 | Zinc 1 | ||
| 4886 | Zinc 2 | ||
| 4889 | Zinc 1 | ||
| 4896 | Zinc 1 | ||
| 4899 | Zinc 2 | ||
| 4903 | Zinc 2 | ||
| 4909 | Zinc 2 | ||
| 4920 | Zinc 3 | ||
| 4925 | Zinc 3 | ||
| 4942 | Zinc 3 | ||
| 4945 | Zinc 3 | ||
| 807 | L -> S | ||
| 1618 | S -> F | ||
| 1739 | S -> A | ||
| 2631 | M -> L | ||
| 2774 | S -> P | ||
| 4230 | D -> G | ||
| 4692 | S -> P | ||
| 4859 | Y -> C | ||
| 5104 | S -> P | ||
| 6033 | V -> A | ||
| 6080 | T -> M | ||
| 6314 | A -> T | ||
| 1723-1743 | Helical | ||
| 1753-1773 | Helical | ||
| 1846-1866 | Helical | ||
| 1889-1909 | Helical | ||
| 2283-2303 | Helical | ||
| 2373-2393 | Helical | ||
| 2562-2582 | Helical | ||
| 2591-2611 | Helical | ||
| 2614-2634 | Helical | ||
| 2646-2666 | Helical | ||
| 3103-3123 | Helical | ||
| 3124-3144 | Helical | ||
| 3154-3174 | Helical | ||
| 3191-3211 | Helical | ||
| 3222-3242 | Helical | ||
| 3260-3280 | Helical | ||
| 3299-3319 | Helical | ||
| 1355-1392 | C4-type | ||
| 3860-3880 | |||
| 3906-3919 | |||
| 5152-5159 | ATP | ||
| 673-674 | Cleavage; by PL-PRO | ||
| 2267-2268 | Cleavage; by PL-PRO | ||
| 2781-2782 | Cleavage; by 3CL-PRO | ||
| 3088-3089 | Cleavage; by 3CL-PRO | ||
| 3381-3382 | Cleavage; by 3CL-PRO | ||
| 3464-3465 | Cleavage; by 3CL-PRO | ||
| 3674-3675 | Cleavage; by 3CL-PRO | ||
| 3785-3786 | Cleavage; by 3CL-PRO | ||
| 3930-3931 | Cleavage; by 3CL-PRO | ||
| 4870-4871 | Cleavage; by 3CL-PRO | ||
| 5470-5471 | Cleavage; by 3CL-PRO | ||
| 5991-5992 | Cleavage; by 3CL-PRO | ||
| 6329-6330 | Cleavage; by 3CL-PRO | ||
| 14-371 | Non-structural protein 2, gammacoronavirus IPR040795PF17896 | ||
| 1042-1147 | Macro domain IPR002589PF01661 | ||
| 1176-1477 | Peptidase C16, coronavirus IPR013016PF08715 | ||
| 1785-2250 | Coronavirus replicase NSP3, C-terminal IPR043611PF19218 | ||
| 2306-2658 | Coronavirus replicase NSP4, N-terminal IPR043612PF19217 | ||
| 2686-2778 | Non-structural protein NSP4, C-terminal, coronavirus IPR032505PF16348 | ||
| 2810-3098 | Peptidase C30, coronavirus IPR008740PF05409 | ||
| 3115-3381 | Non-structural protein 6, coronavirus IPR043610PF19213 | ||
| 3382-3464 | Non-structural protein NSP7, coronavirus IPR014828PF08716 | ||
| 3465-3667 | Non-structural protein NSP8, coronavirus-like IPR014829PF08717 | ||
| 3675-3785 | Non-structural protein NSP9, coronavirus IPR014822PF08710 | ||
| 3798-3920 | RNA synthesis protein NSP10, coronavirus IPR018995PF09401 | ||
| 3949-4305 | RNA polymerase, N-terminal, coronaviral IPR009469PF06478 | ||
| 4341-4826 | RNA-directed RNA polymerase, C-terminal domain IPR001205PF00680 | ||
| 5149-5446 | (+) RNA virus helicase core domain IPR027351PF01443 | ||
| 5471-5988 | Non-structural protein 14, coronavirus IPR009466PF06471 | ||
| 5992-6052 | Coronavirus replicase NSP15, N-terminal oligomerisation IPR043606PF19219 | ||
| 6062-6151 | Coronavirus replicase NSP15, middle domain IPR043608PF19216 | ||
| 6173-6327 | NendoU domain, nidovirus IPR043609PF19215 | ||
| 6330-6630 | Non-structural protein NSP16, coronavirus-like IPR009461PF06460 |
Sequence Alignments
Non-structural protein 2 1-673; PRO_0000283889
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -2.86 | 3ld1.1.A | 99.16 | ||
| Assess | |||||
Non-structural protein 3 674-2267; PRO_0000283890
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -0.97 | 4x2z.1.A | 89.03 | |
| Assess | |||||
| monomer | 1×ZN; | -1.45 | 5bz0.1.A | 88.71 | |
| Assess | |||||
3C-like proteinase 2782-3088; PRO_0000283892
| Description | Oligo-state | Ligands | Structure | Range | |
|---|---|---|---|---|---|
| Crystal structure of infectious bronchitis virus (IBV) main protease | homo-2-mer | 2q6d | |||
| Assess | |||||
Non-structural protein 9 3675-3785; PRO_0000283896
| Description | Oligo-state | Ligands | Structure | Range | |
|---|---|---|---|---|---|
| Infectious bronchitis virus nsp9 | homo-2-mer | 4×PEG; 2×GOL; | 5c94 | ||
| Assess | |||||
RNA-directed RNA polymerase 3931-4870; PRO_0000283898
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 2×ZN; | -2.05 | 7c2k.1.A | 62.95 | |
| Assess | |||||
Helicase 4871-5470; PRO_0000283899
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 2×ZN; | -4.33 | 6jyt.1.A | 59.43 | |
| Assess | |||||
Exoribonuclease 5471-5991; PRO_0000283900
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -3.93 | 5nfy.1.A | 53.09 | |
| Assess | |||||
Uridylate-specific endoribonuclease 5992-6329; PRO_0000283901
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -3.35 | 5yvd.1.A | 37.54 | ||
| Assess | |||||