P0C6Y4 (R1AB_PEDV7) Porcine epidemic diarrhea virus (strain CV777) (PEDV)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

6781 aa; Sequence (Fasta)

Molecule Processing
Non-structural protein 1
Non-structural protein 2
Non-structural protein 3
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
RNA-directed RNA polymerase
Helicase
Exoribonuclease
Uridylate-specific endoribonuclease
Putative 2'-O-methyl transferase

Sequence Features

Add
 1091For PL1-PRO activity
 1239For PL1-PRO activity
 1729For PL2-PRO activity
 1888For PL2-PRO activity
 3038For 3CL-PRO activity
 3141For 3CL-PRO activity
 5032Zinc 1
 5035Zinc 1
 5043Zinc 2
 5046Zinc 1
 5053Zinc 1
 5056Zinc 2
 5060Zinc 2
 5066Zinc 2
 5077Zinc 3
 5082Zinc 3
 5099Zinc 3
 5102Zinc 3
 1959-1979Helical
 2022-2042Helical
 2105-2125Helical
 2127-2147Helical
 2150-2170Helical
 2528-2548Helical
 2619-2639Helical
 2654-2674Helical
 2754-2774Helical
 2787-2807Helical
 2814-2834Helical
 2863-2883Helical
 3336-3356Helical
 3361-3381Helical
 3399-3419Helical
 3431-3451Helical
 3454-3474Helical
 3476-3496Helical
 3500-3520Helical
 1162-1193C4-type
 4039-4055
 4081-4094
 5310-5317ATP
 110-111Cleavage; by PL1-PRO
 895-896Cleavage; by PL1-PRO
 2516-2517Cleavage; by PL2-PRO
 2997-2998Cleavage; by 3CL-PRO
 3299-3300Cleavage; by 3CL-PRO
 3579-3580Cleavage; by 3CL-PRO
 3662-3663Cleavage; by 3CL-PRO
 3857-3858Cleavage; by 3CL-PRO
 3965-3966Cleavage; by 3CL-PRO
 4100-4101Cleavage; by 3CL-PRO
 5027-5028Cleavage; by 3CL-PRO
 5546-5547Cleavage; by 3CL-PRO
 6141-6142Cleavage; by 3CL-PRO
 6480-6481Cleavage; by 3CL-PRO
 112-316Nonstructural protein 2, N-terminal domain, coronavirus
IPR043615PF19211
 434-591Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 739-895Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 1073-1165Peptidase C16, coronavirus
IPR013016PF08715
 1318-1421Macro domain
IPR002589PF01661
 1631-1932Peptidase C16, coronavirus
IPR013016PF08715
 2053-2502Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2545-2879Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 2902-2997Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3026-3308Peptidase C30, coronavirus
IPR008740PF05409
 3324-3579Non-structural protein 6, coronavirus
IPR043610PF19213
 3580-3662Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3663-3853Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 3858-3965Non-structural protein NSP9, coronavirus
IPR014822PF08710
 3975-4095RNA synthesis protein NSP10, coronavirus
IPR018995PF09401
 4113-4461RNA polymerase, N-terminal, coronaviral
IPR009469PF06478
 4499-4983RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680
 5462-5605DNA2/NAM7 helicase-like, C-terminal
IPR041679PF13087
 5628-6138Non-structural protein 14, coronavirus
IPR009466PF06471
 6142-6202Coronavirus replicase NSP15, N-terminal oligomerisation
IPR043606PF19219
 6212-6300Coronavirus replicase NSP15, middle domain
IPR043608PF19216
 6325-6478NendoU domain, nidovirus
IPR043609PF19215
 6482-6779Non-structural protein NSP16, coronavirus-like
IPR009461PF06460

Sequence Alignments

3C-like proteinase 2998-3299; PRO_0000037373

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer 02J;-0.995gwz.1.A2999-3297
100.00
Assess

Non-structural protein 9 3858-3965; PRO_0000037377

DescriptionOligo-stateLigandsStructureRange
Crystal structure of PEDV NSP9 Mutant-C59Ahomo-2-mer 5hiy 3863-3963
Assess
The structure of PEDV NSP9homo-2-mer 5hiz 3864-3962
Assess

RNA-directed RNA polymerase 4101-5027; PRO_0000037379

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-2.547c2k.1.A4101-5024
60.26
Assess

Exoribonuclease 5547-6141; PRO_0000037381

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-3.755nfy.1.A5627-6139
52.33
Assess

Uridylate-specific endoribonuclease 6142-6480; PRO_0000037382

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.665yvd.1.A6142-6478
50.60
Assess