P24928 (RPB1_HUMAN) Homo sapiens (Human)
DNA-directed RNA polymerase II subunit RPB1 UniProtKBInterProSTRINGInteractive Modelling
1970 aa; Sequence (Fasta) ; (Isoform 2)
It is possible new templates exist for this target since these models were created.
Available Structures
43 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| The structure of INTAC-PEC complex |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P18615; P30153; P60899; P63272; P67775; Q5TA45; Q6P9B9; Q75QN2; Q8IXH7; Q8N201; Q8WX92; Q96HW7; Q9H0H0; Q9H3P2; Q9NV88; Q9NVH2; Q9UL03; | 99.17 | 10×ZN; 2×MN; 1×MG; | |||
| Structure of the human Mediator-bound transcription pre-initiation complex |
Heteromer A0JLT2; O15514; O43513; O60244; O75448; O75586; P13984; P18074; P19387; P19388; P19447; P20226; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q71SY5; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7; | 100.0 | 2×MG; 16×ZN; 1×SF4; | |||
| TFIID-based holo PIC on SCP promoter |
Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759; | 100.0 | 17×ZN; 1×SF4; 1×MG; | |||
| p53-bound TFIID-based holo PIC on HDM2 promoter |
Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759; | 100.0 | 16×ZN; 1×SF4; 1×MG; | |||
| Human holo-PIC in the initial transcribing state |
Heteromer O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759; | 100.0 | 2×MG; 11×ZN; | |||
| Human holo-PIC in the initial transcribing state (no IIS) |
Heteromer O15514; P13984; P18074; P19387; P19388; P19447; P20226; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759; | 100.0 | 2×MG; 10×ZN; | |||
| Human core-PIC in the open state |
Heteromer O15514; P13984; P19387; P19388; P20226; P23193; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; | 100.0 | 2×MG; 11×ZN; | |||
| Human holo-PIC in the closed state |
Heteromer O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759; | 100.0 | 2×MG; 11×ZN; | |||
| Human holo-PIC in the open state |
Heteromer O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759; | 100.0 | 2×MG; 11×ZN; | |||
| Human core-PIC in the initial transcribing state |
Heteromer O15514; P13984; P19387; P19388; P20226; P23193; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; | 100.0 | 2×MG; 11×ZN; | |||
| Human core-PIC in the initial transcribing state (no IIS) |
Heteromer O15514; P13984; P19387; P19388; P20226; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; | 100.0 | 2×MG; 11×ZN; | |||
| Human holo-PIC in the closed state |
Heteromer O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759; | 100 | 2×MG; 17×ZN; 1×SF4; | |||
| Human core-PIC in the closed state |
Heteromer O15514; P13984; P19387; P19388; P20226; P23193; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; | 100.0 | 2×MG; 11×ZN; | |||
| Structure of the p53/RNA polymerase II assembly |
Heteromer O15514; P04637; P19387; P19388; P30876; P36954; P52434; P52435; P53803; P61218; P62487; P62875; | 100 | 1×MG; 8×ZN; | |||
| RNA Pol II(G) |
Heteromer O15514; P0CAP2; P19387; P19388; P30876; P36954; P52434; P52435; P53803; P61218; P62487; P62875; | 100.0 | 5×ZN; | |||
| Influenza A/H7N9 polymerase in elongation state with continuous Pol II pS5 CTD peptide mimic bound … |
Heteromer M9TI86; M9TLW3; X5F427; | 100 | 1×2KH; 2×MG; | |||
| Influenza A/H7N9 polymerase in self-stalled pre-termination state, with Pol II pS5 CTD peptide mimi… |
Heteromer M9TI86; M9TLW3; X5F427; | 100.0 | 1×POP; 2×MG; | |||
| 1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII pept… |
Heteromer Q3HM39; Q3HM40; Q3HM41; | 100 | ||||
| 1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII pept… |
Heteromer Q3HM39; Q3HM40; Q3HM41; | 100 | ||||
| Influenza A/H7N9 polymerase in pre-initiation state, intermediate conformation (I) with PB2-C(I), E… |
Heteromer M9TI86; M9TLW3; X5F427; | 100 | ||||
| Influenza A/H7N9 polymerase in pre-initiation state with continuous Pol II pS5 CTD peptide mimic bo… |
Heteromer M9TI86; M9TLW3; X5F427; | 100 | ||||
| Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 2B |
Heteromer Q5V8X3; Q5V8Y6; Q5V8Z9; | 100 | ||||
| Bat influenza A/H17N10 polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD |
Heteromer H6QM90; H6QM91; H6QM92; | 100 | 1×ZN; 15×PO4; | |||
| Crystal structure of SR-related and CTD-associated factor 4(SCAF4-CID)with peptide S2,S5p-CTD |
Heteromer O95104; | 100 | 1×UNX; | |||
| Crystal structure of the SPOC domain of human PHF3 in complex with RNA polymerase II CTD diheptapep… |
Heteromer Q92576; | 100 | ||||
| TDRD3 complex |
Heteromer Q9H7E2; | 100 | ||||
| RPRD1B C-terminal interacting domain bound to a pThr4 CTD peptide |
Heteromer Q9NQG5; | 100 | ||||
| A mechanism for the activation of the influenza virus transcriptase |
Heteromer Q9IMP3; Q9IMP4; Q9IMP5; | 100 | 4×MG; | |||
| CID of human RPRD1A in complex with a phosphorylated peptide from RPB1-CTD |
Heteromer Q96P16; | 100 | 6×UNX; | |||
| Crystal structure of the SPOC domain of human PHF3 in complex with RNA polymerase II CTD diheptapep… |
Heteromer Q92576; | 100 | ||||
| Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy… |
Heteromer Q9UPN6; | 100 | 1×ACT; | |||
| Crystal structure of the SPOC domain of human PHF3 in complex with RNA polymerase II CTD diheptapep… |
Heteromer Q92576; | 100 | ||||
| Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy… |
Heteromer Q9UPN6; | 100 | 1×NH4; 3×SO4; | |||
| Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy… |
Heteromer Q9UPN6; | 100 | 1×NH4; 3×SO4; | |||
| Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy… |
Heteromer Q9UPN6; | 100 | 4×SO4; | |||
| Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD |
Heteromer Q5V8X3; Q5V8Y6; Q5V8Z9; | 100 | ||||
| Influenza A/H7N9 polymerase in replicase-like conformation in pre-initiation state with Pol II pS5 … |
Heteromer M9TI86; M9TLW3; X5F427; | 100 | 1×MG; | |||
| Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated POLR2A pepti… |
Heteromer O60885; | 100 | 1×EDO; | |||
| Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy… |
Heteromer Q9UPN6; | 100 | 6×SO4; | |||
| Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy… |
Heteromer Q9UPN6; | 100 | 4×SO4; | |||
| Crystal structure of the SPOC domain of human SHARP (SPEN) in complex with RNA polymerase II CTD he… |
Heteromer Q96T58; | 100 | ||||
| CTD-specific phosphatase Scp1 in complex with peptide from C-terminal domain of RNA polymerase II |
Heteromer Q9GZU7; | 100 | 1×MG; | |||
| CTD-specific phosphatase Scp1 in complex with peptide C-terminal domain of RNA polymerase II |
Heteromer Q9GZU7; | 100 | 1×MG; | |||
1 SWISS-MODEL model
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 8was.1.5 | monomer | 0.82 | 2×ZN; 1×MG; | 100.00 | ||
4 SWISS-MODEL models built on isoform sequence
| Isoform | Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|---|
| Isoform 2 | 7ycx.1.N | monomer | 0.75 | 2×ZN; | 99.29 | ||
| Isoform 2 | 6o9l.1.A | monomer | 0.68 | 1×MG; 1×ZN; | 99.29 | ||
| Isoform 2 | 8hkc.1.D | monomer | 0.53 | 27.76 | |||
| Isoform 2 | 6pst.1.H | monomer | 0.51 | 34.21 | |||