SMTL ID : 6xre.1

Structure of the p53/RNA polymerase II assembly

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.495, D.497, D.499 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.495, A:D.495, A:D.497, A:D.497, A:D.499

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: P.82, G.83 Chain B: M.1125, A.1126, I.1127 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:M.1125, A:P.82, A:G.83 ZN.3: 6 residues within 4Å: Chain A: F.112, F.113, C.114, Y.187, E.211, K.212 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:F.112, A:Y.187, A:E.211 ZN.4: 2 residues within 4Å: Chain A: E.30 Chain B: C.1122 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.30, A:E.30 ZN.5: 6 residues within 4Å: Chain B: E.959, G.960, I.961 Chain C: A.180, G.181 Chain J: C.10 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Metal complexes: C:A.180, B:E.959, B:E.959, B:E.959 ZN.6: 1 residues within 4Å: Chain C: T.89 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.89 ZN.7: 2 residues within 4Å: Chain I: R.40, N.41 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:R.40 ZN.8: 6 residues within 4Å: Chain I: C.89, H.91, K.92, E.93, C.114, W.123 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.91, I:H.91, I:K.92, I:C.114 ZN.9: 4 residues within 4Å: Chain L: C.36, C.39, G.40, R.42 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:C.36, L:C.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liou, S.H. et al., Structure of the p53/RNA polymerase II assembly. Commun Biol (2021)

Release Date

2021-03-24

Peptides

DNA-directed RNA polymerase II subunit RPB1: A
DNA-directed RNA polymerase II subunit RPB2: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerase II subunit RPB4: D
DNA-directed RNA polymerase II subunit RPB5: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase II subunit RPB7: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerase II subunit RPB11-a: K
DNA-directed RNA polymerases I, II, and III subunit RPABC4: L
Cellular tumor antigen p53: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

DNA-directed RNA polymerase II subunit RPB1

DNA-directed RNA polymerase II subunit RPB2

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit RPB4

DNA-directed RNA polymerase II subunit RPB5

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase II subunit RPB7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11-a

DNA-directed RNA polymerases I, II, and III subunit RPABC4

Cellular tumor antigen p53

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