P41896 | SWISS-MODEL Repository

P41896 (T2FB_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Transcription initiation factor IIF subunit beta UniProtKB InterPro STRING Interactive Modelling

400 aa; Sequence (Fasta) ; 9 identical sequences: Saccharomyces cerevisiae: N1P3E1, G2WE98, C7GK75, B5VIW6, A6ZUZ7, B3LIL1; Saccharomyces pastorianus: A0A6C1DR89; Saccharomyces boulardii: A0A0L8VQF8; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GGE3

It is possible new templates exist for this target since these models were created.

Available Structures

33 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleoso…	8ceo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P47822; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278;	38-358	100.0	1×SF4; 17×ZN; 1×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (comple…	7zsa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	38-358	100.0	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA	7o75 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	38-358	100.0	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex (consensus)	7o4j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	38-358	100.0	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)	7zs9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	38-358	100.0	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA	7o72 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	38-358	100.0	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble	7o4i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	38-358	100.0	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA	7o73 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	38-358	100.0	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, comple…	7zsb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	38-358	100.0	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with core Mediator	8cen PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278;	38-358	100.0	1×SF4; 17×ZN; 1×MG;
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Transcription initiation complex structures elucidate DNA opening (OC)	5fyw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895;	58-370	100.0	10×ZN; 1×MG;
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Transcription initiation complex structures elucidate DNA opening (CC)	5fz5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895;	58-370	100.0	10×ZN; 1×MG;
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Mediator-RNA Polymerase II Pre-Initiation Complex	5sva PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P33308; P34087; P34162; P35189; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P47822; Q00578; Q02939; Q08278; Q12343; Q3E7C1; Q99278;	54-359	100.0	8×ZN; 1×MG;
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the P-lobe of RNA polymerase II pre-initiation complex	5fmf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q3E7C1;	54-359	100	2×MG; 9×ZN;
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RNA polymerase II pre-initiation complex (PIC1)	7ml0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	58-351	100.0	17×ZN; 1×MG; 1×SF4;
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RNA polymerase II pre-initiation complex (PIC3)	7ml2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	58-351	100.0	17×ZN; 1×MG; 1×SF4;
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Structure of a yeast closed complex with distorted DNA (core CCdist)	6gyl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895;	58-351	100.0	10×ZN; 1×MG;
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RNA polymerase II pre-initiation complex (PIC2)	7ml1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	58-351	100.0	19×ZN; 1×SF4; 1×MG;
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RNA polymerase II initially transcribing complex (ITC)	7ml4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	58-351	100.0	15×ZN; 1×MG; 1×SF4;
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STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR	5oqm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278;	58-351	100.0	16×ZN; 1×MG; 1×SF4;
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STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH	5oqj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	58-351	100.0	16×ZN; 1×MG; 1×SF4;
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Structure of a yeast closed complex with distorted DNA (CCdist)	6gym PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	58-351	100.0	1×SF4; 16×ZN; 1×MG;
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Composite map of PIC_delta_TFIIK form2	8uoq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	54-338	100.0	15×ZN; 2×MG; 1×SF4;
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Composite map of PICdeltaTFIIK form1	8uot PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	54-338	100.0	1×SF4; 15×ZN; 2×MG;
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consensus map of PICdeltaTFIIK form1	8umi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	54-338	100.0	1×SF4; 15×ZN; 2×MG;
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Consensus map of PICdeltaTFIIK form2	8umh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	54-338	100.0	15×ZN; 2×MG; 1×SF4;
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Structure of a yeast closed complex (core CC1)	6gyk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P38902; P40422; P41895;	58-280	100.0	9×ZN; 1×MG;
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Mediator-PIC Early (Core B)	7uif PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34087; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P47822; Q06213; Q08278; Q12321; Q12343; Q99278;	56-249	100.0
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Core Mediator-PICearly (Copy A)	7ui9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34087; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P47822; Q06213; Q08278; Q12321; Q12343; Q99278;	56-249	100.0
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Complex structure of trailing EC of EC+EC (trailing EC-focused)	7mk9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895;	54-243	100.0	8×ZN; 2×MG;
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Composite structure of EC+EC	7mei PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895;	54-243	100.0	16×ZN; 4×MG;
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Architecture of the RNA polymerase II-Mediator core transcription initiation complex	4v1n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422;	54-227	100	9×ZN; 1×MG;
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Architecture of the RNA polymerase II-Mediator core transcription initiation complex	4v1o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P34087; P34162; P38304; P38782; P38902; P40422; Q99278;	54-227	100	9×ZN; 1×MG;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7o4i.1.Y	monomer	0.60	38-358		100.00
	Download ModelCIF format PDB format Model report Compare Structure Assessment

	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P41896 (T2FB_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Transcription initiation factor IIF subunit beta UniProtKBInterProSTRINGInteractive Modelling

Available Structures

33 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Transcription initiation factor IIF subunit beta UniProtKB InterPro STRING Interactive Modelling