P06839 | SWISS-MODEL Repository

P06839 (RAD3_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

General transcription and DNA repair factor IIH helicase subunit XPD/RAD3 UniProtKB InterPro STRING Interactive Modelling

778 aa; Sequence (Fasta) ; 6 identical sequences: Saccharomyces cerevisiae: N1P571, G2WD57, C8Z7J4, C7GS39, A6ZRC7; Saccharomyces pastorianus: A0A6C1DR30

It is possible new templates exist for this target since these models were created.

Available Structures

29 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Structure of TFIIH/Rad4-Rad23-Rad33/DNA in DNA opening	7k04 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P14736; P32776; Q00578; Q02939; Q04231; Q04673; Q12004; Q3E7C1;	1-754	100	2×CA; 1×SF4; 5×ZN;
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RNA polymerase II pre-initiation complex (PIC1)	7ml0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-754	100.0	17×ZN; 1×MG; 1×SF4;
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RNA polymerase II pre-initiation complex (PIC3)	7ml2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-754	100	17×ZN; 1×MG; 1×SF4;
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RNA polymerase II pre-initiation complex (PIC2)	7ml1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-754	100	19×ZN; 1×SF4; 1×MG;
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Nucleotide Excision Repair complex TFIIH Rad4-33	7m2u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P14736; P32776; Q00578; Q02939; Q04231; Q04673; Q12004; Q3E7C1;	1-754	100	1×SF4; 5×ZN; 2×CA;
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General transcription factor TFIIH (weak binding)	7ml3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32776; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-754	100	7×ZN; 1×SF4;
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Structure of TFIIH in TFIIH/Rad4-Rad23-Rad33 DNA opening complex	7k01 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32776; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-754	100	5×ZN; 1×SF4;
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RNA polymerase II initially transcribing complex (ITC)	7ml4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-754	100	15×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleoso…	8ceo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278;	1-752	100	1×SF4; 17×ZN; 1×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (comple…	7zsa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA	7o75 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex (consensus)	7o4j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast TFIIH in the expanded state within the pre-initiation complex	7o4l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P20433; P20435; P32776; P34087; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 11×ZN; 1×BEF; 1×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)	7zs9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA	7o72 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble	7o4i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast TFIIH in the contracted state within the pre-initiation complex	7o4k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P20433; P20435; P32776; P34087; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 10×ZN; 1×BEF; 1×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA	7o73 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, comple…	7zsb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-752	100	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with core Mediator	8cen PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278;	1-752	100	1×SF4; 17×ZN; 1×MG;
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Composite map of PIC_delta_TFIIK form2	8uoq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-752	100	15×ZN; 2×MG; 1×SF4;
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Composite map of PICdeltaTFIIK form1	8uot PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 15×ZN; 2×MG;
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consensus map of PICdeltaTFIIK form1	8umi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-752	100	1×SF4; 15×ZN; 2×MG;
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Consensus map of PICdeltaTFIIK form2	8umh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-752	100	15×ZN; 2×MG; 1×SF4;
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STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR	5oqm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278;	18-723	95.27	16×ZN; 1×MG; 1×SF4;
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STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH	5oqj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	18-723	95.27	16×ZN; 1×MG; 1×SF4;
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Structure of a yeast closed complex with distorted DNA (CCdist)	6gym PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	18-723	95.27	1×SF4; 16×ZN; 1×MG;
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Mediator-RNA Polymerase II Pre-Initiation Complex	5sva PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P33308; P34087; P34162; P35189; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q08278; Q12343; Q3E7C1; Q99278;	18-718	100.0	8×ZN; 1×MG;
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the P-lobe of RNA polymerase II pre-initiation complex	5fmf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q3E7C1;	18-718	100.0	2×MG; 9×ZN;
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3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8ceo.1.A	monomer	0.81	1-752	1×SF4;	100.00
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5sva.1.Y	monomer	0.54	18-718		100.00
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5fmf.1.0	monomer	0.51	18-718		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P06839 (RAD3_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

General transcription and DNA repair factor IIH helicase subunit XPD/RAD3 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

29 Experimental Structures

3 SWISS-MODEL models

Alignments

Background

Resolution

General transcription and DNA repair factor IIH helicase subunit XPD/RAD3 UniProtKB InterPro STRING Interactive Modelling