P47076 | SWISS-MODEL Repository

P47076 (RPC9_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

DNA-directed RNA polymerase III subunit RPC9 UniProtKB InterPro STRING Interactive Modelling

161 aa; Sequence (Fasta) ; 10 identical sequences: Saccharomyces cerevisiae: N1P8K7, G2WH00, C8ZBK0, C7GSP2, B5VLG1, A0A7I9F8F9, A6ZPV8; Saccharomyces pastorianus: A0A6C1DV05; Saccharomyces boulardii: A0A0L8VMX8; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GIL5

It is possible new templates exist for this target since these models were created.

However, an attempt to improve models for this target was made on 2024-04-04. The outcome - only low quality models could be built.

Available Structures

26 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.6 A (focus subunit AC40).	7z0h SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307; Q07163;	1-161	7×ZN; 2×MG;
Assess
Yeast RNA polymerase III elongation complex	6cnf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-161	7×ZN;
Assess
Apo RNA Polymerase III - closed conformation (cPOL3)	6eu3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	6×ZN; 1×MG;
Assess
Structure of yeast RNA Polymerase III elongation complex at 3.3 A	8bws SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	6×ZN; 1×MG; 3×4QM;
Assess
RNA Polymerase III closed complex CC1.	6f42 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-161	7×ZN;
Assess
Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A	7z2z SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307; Q07163;	1-161	7×ZN; 2×MG; 1×4QM;
Assess
Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.9 A (focus subunit C11 terminal Zn…	7z30 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307; Q07163;	1-161	7×ZN; 2×MG;
Assess
Apo RNA Polymerase III - open conformation (oPOL3)	6eu2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	6×ZN; 1×MG;
Assess
Structure of yeast RNA Polymerase III Elongation Complex (EC)	7z1m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	7×ZN; 1×MG; 2×4QM;
Assess
Structure of yeast RNA Polymerase III PTC + NTPs	7z1o SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	7×ZN; 1×MG; 2×1N7;
Assess
Yeast RNA polymerase III initial transcribing complex	6cnb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-161	7×ZN;
Assess
Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.7 A (focus subunit C11, no C11 C-t…	7z31 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307; Q12414;	1-161	6×ZN; 1×MG;
Assess
Structure of yeast RNA Polymerase III Delta C53-C37-C11	7z1n SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P28000; P32349; P32910; P35718; P40422;	1-161	5×ZN; 1×MG; 2×1N7;
Assess
Yeast RNA polymerase III open complex	6cnc SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-161	7×ZN;
Assess
Yeast RNA polymerase III natural open complex (nOC)	6cnd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-161	7×ZN;
Assess
Structure of yeast RNA Polymerase III Pre-Termination Complex (PTC)	7z1l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	7×ZN; 1×MG; 2×4QM;
Assess
RNA Polymerase III open complex	6f40 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-161	7×ZN;
Assess
Cryo-EM structure of yeast RNA polymerase III elongation complex at 3. 9 A	5fj8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	6×ZN;
Assess
RNA Polymerase III closed complex CC2.	6f44 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-161	7×ZN;
Assess
RNA Polymerase III initially transcribing complex	6f41 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-161	7×ZN;
Assess
Cryo-EM structure of yeast apo RNA polymerase III at 4.6 A	5fj9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	6×ZN;
Assess
Cryo-EM structure of yeast RNA polymerase III at 4.7 A	5fja SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-161	6×ZN;
Assess
RNA Polymerase III open pre-initiation complex (OC-PIC)	6eu0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P13393; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P29056; P32349; P32910; P35718; P36121; P40422; P46678; Q04307;	1-160	7×ZN; 1×MG;
Assess
RNA Polymerase III - open DNA complex (OC-POL3).	6eu1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; Q04307;	1-160	6×ZN; 1×MG;
Assess
Cryo-EM structure of the RNA Polymerase III-Maf1 complex	6tut SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04051; P07703; P17890; P20434; P20435; P20436; P22139; P22276; P25441; P28000; P32349; P32910; P35718; P36121; P40422; P41910; Q04307;	1-159	7×ZN;
Assess
X-ray structure of RNA polymerase III subcomplex C17-C25.	2ckz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P35718;	1-69
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
6eu0.1.D	monomer	0.50	1-160		100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P47076 (RPC9_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

DNA-directed RNA polymerase III subunit RPC9 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

26 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

DNA-directed RNA polymerase III subunit RPC9 UniProtKB InterPro STRING Interactive Modelling