SMTL ID : 7z2z.1

Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
7 x ZN: ZINC ION(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
1 x 4QM: (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Nguyen, P.Q. et al., Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun (2023)
Release Date
2023-04-05
Peptides
DNA-directed RNA polymerase III subunit RPC1: A
DNA-directed RNA polymerase III subunit RPC2: B
DNA-directed RNA polymerases I and III subunit RPAC1: C
DNA-directed RNA polymerase III subunit RPC9: D
DNA-directed RNA polymerases I, II, and III subunit RPABC1: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase III subunit RPC8: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase III subunit RPC10: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerases I and III subunit RPAC2: K
DNA-directed RNA polymerases I, II, and III subunit RPABC4: L
DNA-directed RNA polymerase III subunit RPC5: M
DNA-directed RNA polymerase III subunit RPC4: N
DNA-directed RNA polymerase III subunit RPC3: O
DNA-directed RNA polymerase III subunit RPC6: P
DNA-directed RNA polymerase III subunit RPC7: Q
Integrase: U
Unknown RNA polymerase III chain: V
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
U
W
V
X

DNA-directed RNA polymerase III subunit RPC1

DNA-directed RNA polymerase III subunit RPC2

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase III subunit RPC9

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase III subunit RPC8

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase III subunit RPC10

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

DNA-directed RNA polymerase III subunit RPC5

DNA-directed RNA polymerase III subunit RPC4

DNA-directed RNA polymerase III subunit RPC3

DNA-directed RNA polymerase III subunit RPC6

DNA-directed RNA polymerase III subunit RPC7

Integrase

Unknown RNA polymerase III chain

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1dzf.1 | 1i3q.1 | 1i50.1 | 1i50.2 | 1i6h.1 | 1k83.1 | 1nik.1 | 1r5u.1 | 1r9s.1 | 1r9t.1 | 1sfo.1 | 1twa.1 | 1twc.1 | 1twf.1 | 1twf.2 | 1twg.1 | 1twg.2 | 1twg.3 | 1twh.1 | 1wcm.1 | 1y1v.1 | 1y1w.1 | 1y77.1 | 2b63.1 | 2b8k.1 | 2e2h.1 | 2e2i.1 | 2e2j.1 | 2ja5.1 | 2ja6.1  more...