P63272 | SWISS-MODEL Repository

P63272 (SPT4H_HUMAN) Homo sapiens (Human)

Transcription elongation factor SPT4 UniProtKB Protein Atlas InterPro STRING Interactive Modelling

117 aa; Sequence (Fasta) ; 104 identical sequences

Available Structures

25 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of the human transcription elongation factor DSIF, hSpt4/hSpt5 (176-273)	3h7h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00267;	2-117	100	1×BME; 1×ZN;
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Structural insights into human co-transcriptional capping - structure 4	8p4d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P60899;	2-117	100	1×ZN;
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Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elo…	6ted PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3;	2-117	100	9×ZN; 1×MG;
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Structure of paused transcription complex Pol II-DSIF-NELF - post-translocated	8uhd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D0TE17; A0A8D1AQR7; A0A8D1DPV6; A0A8W4F9W9; I3LCH3; I3LGP4; I3LSI7; O00267; P18615; P60899; Q8IXH7; Q8WX92; Q9H3P2;	2-117	100	9×ZN; 1×MG;
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Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38)	7und PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3;	2-117	100	9×ZN; 1×MG;
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human co-transcriptional RNA capping enzyme RNGTT	8w8e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P18615; P60899; Q8IXH7; Q8WX92; Q9H3P2;	2-117	100	1×MG; 8×ZN; 1×GTP;
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Structural insights into human co-transcriptional capping - structure 6	8p4f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A4X1VYD0; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; Q8N1G2;	2-117	100	1×MGT; 8×ZN; 1×MG; 1×SAM;
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human co-transcriptional RNA capping enzyme RNGTT-CMTR1	8w8f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P60899; Q8N1G2;	2-117	100	1×MG; 8×ZN; 1×GTP;
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Structure of activated transcription complex Pol II-DSIF-PAF-SPT6	6gmh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LJR4; I3LSI7; O00267; P60899; Q6PD62; Q7KZ85; Q9GZS3;	2-117	100	9×ZN; 1×MG;
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Structure of an RNA polymerase II-DSIF transcription elongation complex	5oik PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A5PJW8; F2Z4H3; G3MZY8; O00267; Q1JQ91; Q2T9T3; Q32P73; Q32P78; Q32P79; Q32PE0; Q3T0Q3; Q3ZBC0; Q5E9B8;	2-117	100	8×ZN; 1×MG;
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Structure of paused transcription complex Pol II-DSIF-NELF	6gml PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LJR4; I3LSI7; O00267; P60899; Q8IXH7; Q8WX92; Q9H3P2;	2-117	100	1×MG; 9×ZN;
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Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)	9j0n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A481BYI6; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LSI7; O00267; P04908; P06899; P18615; P23193; P60899; P62805; P84243; Q8IXH7; Q8WX92; Q9H3P2;	2-117	100	9×ZN; 1×MG;
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Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)	9j0o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A481BYI6; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LSI7; O00267; P04908; P06899; P18615; P60899; P62805; P84243; Q8IXH7; Q8WX92; Q9H3P2;	2-117	100	9×ZN; 1×MG;
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Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)	9j0p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A481BYI6; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LSI7; O00267; P04908; P06899; P18615; P60899; P62805; P84243; Q8IXH7; Q8WX92; Q9H3P2;	2-117	100	9×ZN; 1×MG;
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Structure of mammalian Pol II-DSIF-SPT6-PAF1-TFIIS-hexasome elongation complex	8a3y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; A0A8D0JYF1; A0A8J1LZU9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P62799; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3;	2-117	100	9×ZN; 1×MG;
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Structure of active transcription elongation complex Pol II-DSIF-ELL2-EAF1(composite structure)	7oky PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O00472; P60899; Q96JC9;	2-117	100	1×MG; 9×ZN;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, bp +27	9egz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3;	2-117	100	12×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 30 bp upstream	9eh0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3;	2-117	100	9×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-FACT nucleosome upstream	9eh2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; Q08945; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; Q9Y5B9;	2-117	100	9×ZN; 1×MG;
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Structure of paused transcription complex Pol II-DSIF-NELF - tilted	8uha PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P18615; P60899; Q8IXH7; Q8WX92; Q9H3P2;	2-117	100	9×ZN; 1×MG;
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Structural insights into human co-transcriptional capping - structure 3	8p4c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P60899;	2-117	100	3×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-hexasome, bp +27	9egx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9GZS3;	2-117	100	9×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-nucleosome, bp +27	9egy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9GZS3;	2-117	100	9×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 20 bp upstream	9eh1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B8RVL1; A0A2R8YHB3; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D1DPV6; A0A8W4F9W9; B7Z4W0; F1RKE4; I3LCB2; I3LCH3; I3LSI7; P02281; P06897; P60899; P62799; Q6PD62; Q92541; Q96ST2; Q9BYW2; Q9GZS3;	2-117	100	9×ZN; 1×MG;
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The structure of INTAC-PEC complex	7ycx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P18615; P24928; P30153; P60899; P67775; Q5TA45; Q6P9B9; Q75QN2; Q8IXH7; Q8N201; Q8WX92; Q96HW7; Q9H0H0; Q9H3P2; Q9NV88; Q9NVH2; Q9UL03;	2-117	100	10×ZN; 2×MN; 1×MG;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	6gml.1.R	monomer	0.82	2-117	1×ZN;	100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P63272 (SPT4H_HUMAN) Homo sapiens (Human)

Transcription elongation factor SPT4 UniProtKBProtein AtlasInterProSTRINGInteractive Modelling

Available Structures

25 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Transcription elongation factor SPT4 UniProtKB Protein Atlas InterPro STRING Interactive Modelling