SMTL ID : 8p4c.1

Structural insights into human co-transcriptional capping - structure 3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.71, C.74, C.81, P.82, H.84 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.71, A:C.74, A:H.84 ZN.2: 4 residues within 4Å: Chain A: C.111, C.114, C.184, Y.187 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.111, A:C.114 ZN.4: 3 residues within 4Å: Chain Q: C.16, C.19, C.33 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:C.16, Q:C.19, Q:C.33

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.495, D.497, D.499 Chain N: U.17 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.497, A:D.497, A:D.499, A:D.499

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garg, G. et al., Structural insights into human co-transcriptional capping. Mol.Cell (2023)

Release Date

2023-08-16

Peptides

DNA-directed RNA polymerase II subunit RPB1: A
mRNA-capping enzyme: B
DNA-directed RNA polymerase subunit beta: E
DNA-directed RNA polymerase II subunit RPB3: F
DNA-directed RNA polymerase II subunit E: G
DNA-directed RNA polymerase II subunit F: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3: I
DNA-directed RNA polymerase II subunit RPB9: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5: K
DNA-directed RNA polymerase II subunit RPB11-a: L
RNA polymerase II subunit K: M
RNA polymerase II subunit D: O
DNA-directed RNA polymerase II subunit RPB7: P
Transcription elongation factor SPT4: Q
Transcription elongation factor SPT5: R

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
M

E
B

F
C

G
E

H
F

I
H

J
I

K
J

L
K

M
L

O
D

P
G

Q
Y

R
Z

DNA-directed RNA polymerase II subunit RPB1

mRNA-capping enzyme

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerase II subunit F

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11-a

RNA polymerase II subunit K

RNA polymerase II subunit D

DNA-directed RNA polymerase II subunit RPB7

Transcription elongation factor SPT4

Transcription elongation factor SPT5

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