Q03463 (POLG_HCVJ1) Hepatitis C virus genotype 1b (isolate HC-J1) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3011 aa; Sequence (Fasta)

Molecule Processing
Core protein p21
Core protein p19
Envelope glycoprotein E1
Envelope glycoprotein E2
p7
Protease NS2-3
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
Non-structural protein 5A
RNA-directed RNA polymerase

Sequence Features

 952For protease NS2-3 activity; shared with dimeric partner
 972For protease NS2-3 activity; shared with dimeric partner
 993For protease NS2-3 activity; shared with dimeric partner
 1083Charge relay system; for serine protease NS3 activity
 1107Charge relay system; for serine protease NS3 activity
 1165Charge relay system; for serine protease NS3 activity
 1123Zinc
 1125Zinc
 1171Zinc
 1175Zinc
 2011Zinc
 2029Zinc
 2031Zinc
 2052Zinc
 169-189Helical
 359-379Helical
 726-746Helical
 758-778Helical
 783-803Helical
 814-834Helical
 882-902Helical
 929-949Helical
 1658-1678Helical
 1806-1826Helical
 1829-1849Helical
 1851-1871Helical
 1882-1902Helical
 1973-2002
 2991-3011Helical
 1230-1237ATP
 177-178Cleavage; by host signal peptidase
 191-192Cleavage; by host signal peptidase
 746-747Cleavage; by host signal peptidase
 809-810Cleavage; by host signal peptidase
 1026-1027Cleavage; by protease NS2-3
 1657-1658Cleavage; by serine protease NS3
 1711-1712Cleavage; by serine protease NS3
 1972-1973Cleavage; by serine protease NS3
 2420-2421Cleavage; by serine protease NS3
 2-115Hepatitis C virus core protein, N-terminal
IPR002522PF01543
 116-190Hepatitis C virus core protein, C-terminal
IPR002521PF01542
 193-382Hepatitis C virus envelope glycoprotein E1
IPR002519PF01539
 387-729Hepatitis C virus non-structural protein E2/NS1
IPR002531PF01560
 811-1005Hepatitis C virus non-structural protein NS2
IPR002518PF01538
 1056-1203Peptidase S29, hepatitis C virus NS3 protease
IPR004109PF02907
 1294-1359DEAD box, Flavivirus
IPR011492PF07652
 1658-1711Hepatitis C virus non-structural protein NS4a
IPR000745PF01006
 1728-1921Hepatitis C virus non-structural protein NS4b
IPR001490PF01001
 1974-1996Hepatitis C virus non-structural 5a protein
IPR002868PF01506
 2006-2067NS5A domain 1a
IPR013192PF08300
 2068-2168Hepatitis C virus non-structural 5a, 1B domain
IPR013193PF08301
 2179-2420Hepatitus C virus, NS5a, C-terminal
IPR024350PF12941
 2423-2932RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

Envelope glycoprotein E1 192-383; PRO_0000278733

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Solution structure of the transmembrane proximal region of the hepatis C virus E1 glycoproteinmonomer 2knu 314-342

Envelope glycoprotein E2 384-746; PRO_0000278734

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer NAG;-2.386mej.1.C405-645
87.79

Serine protease NS3 1027-1657; PRO_0000278737

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal Structure of MHC class I HLA-A2 molecule complexed with HCV NS3-1073-1081 nonapeptide Heteromer
P04439; P61769;
CIT;3mrg 1073-1081
Crystal Structure of MHC class I HLA-A2 molecule complexed with HCV NS3-1073-1081 nonapeptide V5M v… Heteromer
P04439; P61769;
3mrj 1073-1081
Crystal Structure of MHC class I HLA-A2 molecule complexed with HCV NS3-1073-1081 nonapeptide G4M-V… Heteromer
P04439; P61769;
3mri 1073-1081
Crystal Structure of MHC class I HLA-A2 molecule complexed with HCV NS3-1073-1081 nonapeptide N3S v… Heteromer
P04439; P61769;
3mrh 1073-1081
Crystal Structure of MHC class I HLA-A2 molecule complexed with HCV NS3-1073-1081 nonapeptide C6V v… Heteromer
P04439; P61769;
3mrl 1073-1081
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer MG;0.165wdx.1.A1027-1657
79.56

RNA-directed RNA polymerase 2421-3011; PRO_0000278741

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -0.312ax0.1.A2421-2982
89.82