Q04206 | SWISS-MODEL Repository

Q04206 (TF65_HUMAN) Homo sapiens (Human)

Transcription factor p65 UniProtKB InterPro STRING Interactive Modelling

551 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4); 1 identical sequence: Gorilla gorilla gorilla: G3SHV6

Available Structures

88 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
I-KAPPA-B-ALPHA/NF-KAPPA-B COMPLEX	1nfi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19838; P25963;	20-314	99.66
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Crystal Structure of NFkB, IRF7, IRF3 bound to the interferon-b enhancer	2o61 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19838; Q14653; Q92985;	20-291	100
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Crystal structure of a higher-order complex of p50:RelA bound to the HIV-1 LTR	3gut PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19838;	20-291	97.43
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NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the transacti…	5urn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32776;	521-551	96.77
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NMR structure of the complex between the KIX domain of CBP and the transactivation domain 1 of p65	5u4k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P45481;	521-551	96.77
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Structure of importin a3 bound to the p50- and p65-NLSs	7lf4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00629; P19838;	299-311	100
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solution structures of BRD4 second bromodomain with NF-kB-K310ac peptide	2lsp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60885;	304-316	100
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14-3-3 sigma with RelA/p65 binding site pS45 in complex with DP005	6nv2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	42-50	88.89	2×CL; 2×0V4;
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14-3-3 sigma with RelA/p65 binding site pS45	6qhl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-192	7o59 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×V2N; 2×V2K; 2×CL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-046	7o3a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V0T; 2×CA; 2×GOL; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-180	7biq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×TVB; 6×CA; 4×CL; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-187	7biw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×TW8; 4×CA; 2×CL; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-185	7nws PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UT8; 4×CL; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-184	7nxs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UVK; 2×CL; 2×MG; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-182	7nxw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UVZ; 4×CL; 2×MG; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-188	7nv4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UST; 4×CL; 2×MG; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-183	7nxt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UVE; 4×CL; 2×MG; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-179	7bi3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×TQW; 2×GOL; 4×CA; 2×CL; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-181	7nxy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UVQ; 4×CL; 2×MG; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-186	7nvi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×USW; 4×CL; 2×MG; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521	6yow PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×L3Y;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound LvD1009	7nqp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×TJ8; 2×MG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-069	7bjf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×TZH;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-111	7nr7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UON; 2×UOT; 2×PEG; 2×CL; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-134	7nye PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UVH; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-135	7nm3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UHQ; 4×GOL; 2×CA;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-154	7bjw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×TZW;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-131	7nyf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UVB; 2×MG; 2×CL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-125	7nz6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UWH; 2×CA; 2×CL; 4×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-124	7nk5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UGN; 2×CA; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-142	7bjl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×TWQ;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-117	7o3f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×V0W; 2×CL; 2×MG; 6×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-116	7o3p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×CA; 2×GOL; 2×PEG; 2×V1K;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-130	7ny4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UVN; 2×CL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-120	7nzv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UXN; 2×CL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-083	7o6j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	6×V48; 2×CL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-097	7o6m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×V42; 2×CA; 2×CL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-133	7nj9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UGE; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-080	7o6k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×V4N; 2×CL; 2×CA; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-096	7o6o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×V3Z; 2×CL; 2×CA;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-127	7nyg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UVT; 2×CL; 2×MG; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-126	7nm1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UHN; 2×CA; 2×CL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-070	7nmh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×GOL; 2×CA; 2×UHZ; 2×CL; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-153	7bkh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×U1B;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-157	7o57 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×V2E;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-132	7njb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×GOL; 2×CL; 2×UG8;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-123	6ypy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×P7E;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-121	7nzk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UWK;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-122	7nzg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×UWQ; 2×CA;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-044	7bjb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×TZK; 2×GOL; 4×CA; 2×MG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-028	6yp3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×P5Q;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-033	6yp8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×P6Z;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-037	6ypl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×P6H;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-011	6yp2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×P5N;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-175	7biy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×TWE;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-025	6yoy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×L3S;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-158	7o5a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×V2Q;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-161	7o5f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V32; 2×MG; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-042	7o3r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V1E; 2×CA; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-166	7o5p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×V3N;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-176	7o6g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V4H; 2×CA; 2×PEG; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-164	7o5g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V3B; 4×PEG; 2×MG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-173	7o5x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V3W; 2×CA; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-041	7o3q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	6×CL; 2×V1Q; 2×PEG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-159	7o5c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×V2T; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-168	7o5u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V3T; 2×CA;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-085	7o6i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V4B; 2×CA;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-165	7o5o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	4×CL; 2×V3K; 2×GOL; 2×CA;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-027	6yox PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-51	88.89	2×CL; 2×L3V; 2×CA; 2×MG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-043	7o34 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	44-51	87.5	2×V0Q; 2×MG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-118	7nle PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	44-51	87.5	2×CL; 2×GOL; 2×UHW;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-128	7nk3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-50	87.5	2×UGQ; 2×CL; 2×CA; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-129	6yq2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-50	87.5	2×P7T;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-167	7o5s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-50	87.5	4×CL; 2×V3Q; 2×MG; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-045	7o3s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	44-51	87.5	4×CL; 2×V1H; 2×MG;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-178	7o6f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-50	87.5	4×CL; 2×V4K; 2×CA; 2×GOL;
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Structure of importin a2 bound to p65-NLS	7leu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P52293;	299-306	100
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14-3-3 sigma with p65 (RelA) binding site pS45 and covalently bound PC2046	7nsv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-49	85.71	2×UQN; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-119	7nla PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-49	85.71	2×CL; 2×CA; 2×UHT;
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Crystal Structure of Brd4 Bromodomain 1 in Complex with Acetylated Rel Peptide	4kv1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60885;	308-314	100
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-160	7o5d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-49	85.71	4×CL; 2×V2W; 2×MG; 2×GOL;
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14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-110	7nm9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	43-48	100	2×S9E; 2×PEG;
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Human SETD6 in complex with RelA Lys310 peptide	3rc0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q8TBK2;	307-312	100	10×EDO; 1×SAM;
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Structure of importin a2 bound to the p50- and p65-NLSs	7let PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19838; P52293;	299-304	100
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Brd4 Bromodomain 2 in Complex with Acetylated Rel Peptide	4kv4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60885;	308-312	100	1×DTT;
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14-3-3 sigma with RelA/p65 binding site pS281	6qhm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P31947;	280-282	100
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Human SETD6 in complex with RelA Lys310	3qxy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q8TBK2;	310-310	100	1×SAM; 11×EDO;
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4 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
9bdv.1.A	monomer	0.84	19-294	97.21
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1ooa.1.B	monomer	0.76	18-291	44.60
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1nfi.1.A	monomer	0.76	20-313	99.67
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2lww.1.B	monomer	0.52	427-491	81.54
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

11 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
Isoform 2	9bdv.1.A	monomer	0.84	6-281	95.47
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Isoform 2	1ooa.1.B	monomer	0.77	6-278	44.76
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Isoform 2	1nfi.1.A	monomer	0.76	7-300	98.00
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Isoform 2	2lww.1.B	monomer	0.52	414-478	81.54
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Isoform 3	9bdv.1.A	monomer	0.82	19-284	97.11
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Isoform 3	1nfi.1.A	monomer	0.74	20-303	99.66
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Isoform 3	1ooa.1.B	monomer	0.73	18-281	45.85
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Isoform 3	2lww.1.B	monomer	0.51	417-481	81.54
Download ModelCIF format PDB format Model report Compare Structure Assessment
Isoform 4	9bdv.1.A	monomer	0.80	19-291	97.53
Download ModelCIF format PDB format Model report Compare Structure Assessment
Isoform 4	1nfi.1.A	monomer	0.75	20-310	98.99
Download ModelCIF format PDB format Model report Compare Structure Assessment
Isoform 4	2lww.1.B	monomer	0.52	424-488	81.54
Download ModelCIF format PDB format Model report Compare Structure Assessment

Q04206 (TF65_HUMAN) Homo sapiens (Human)

Transcription factor p65 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

88 Experimental Structures

4 SWISS-MODEL models

11 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Transcription factor p65 UniProtKB InterPro STRING Interactive Modelling