SMTL ID : 6nv2.1

14-3-3 sigma with RelA/p65 binding site pS45 in complex with DP005

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP

2 x 0V4: (4R,5R,6R,6aS,9S,9aE,10aR)-5-hydroxy-9-(methoxymethyl)-6,10a-dimethyl-3-(propan-2-yl)-1,2,4,5,6,6a,7,8,9,10a-decahydrodicyclopenta[a,d][8]annulen-4-yl alpha-D-glucopyranoside(Non-covalent)

0V4.2: 15 residues within 4Å: Chain A: C.43, N.47, S.50, V.51, F.124, K.127, M.128, P.172, I.173, G.176, L.223, I.224 Chain B: I.8, P.9, R.12 12 PLIP interactions: 3 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:I.8, A:N.47, A:F.124, A:I.173 Water bridges: B:R.12, B:R.12, A:N.47, A:N.47, A:N.47, A:D.220, A:D.220 Hydrogen bonds: A:K.127 0V4.4: 15 residues within 4Å: Chain C: C.43, N.47, S.50, V.51, F.124, K.127, M.128, P.172, I.173, G.176, L.223, I.224 Chain D: I.8, P.9, R.12 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:N.47, C:F.124, C:I.173, D:I.8 Hydrogen bonds: C:K.127 Water bridges: C:N.47, C:N.47, C:N.47, C:D.220, C:D.220, D:R.12, D:R.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolter, M. et al., Selectivity via Cooperativity: Preferential Stabilization of the p65/14-3-3 Interaction with Semisynthetic Natural Products. J.Am.Chem.Soc. (2020)

Release Date

2020-05-13

Peptides

14-3-3 protein sigma: AC
Transcription factor p65: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

14-3-3 protein sigma

Transcription factor p65

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