Q04544 (POLG_SOUV3) Southampton virus (strain GI/Human/United Kingdom/Southampton/1991) (SHV)(Hu/NV/SHV/1991/UK)

Genome polyprotein UniProtKBInterProInteractive Modelling

1788 aa; Sequence (Fasta)

Molecule Processing
Protein p48
NTPase
Protein p22
Viral genome-linked protein
3C-like protease
RNA-directed RNA polymerase

Sequence Features

 1129For 3CLpro activity
 1153For 3CLpro activity
 1238For 3CLpro activity
 561-568ATP
 399-400Cleavage; by 3CLpro
 762-763Cleavage; by 3CLpro
 961-962Cleavage; by 3CLpro
 1099-1100Cleavage; by 3CLpro
 1280-1281Cleavage; by 3CLpro
 185-541Viral polyprotein, Caliciviridae N-terminal
IPR013614PF08405
 557-658Helicase, superfamily 3, single-stranded DNA/RNA virus
IPR000605PF00910
 707-1268Norovirus peptidase C37
IPR001665PF05416
 1314-1743RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680

Sequence Alignments

NTPase 400-762; PRO_0000036936

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.945grb.1.A550-687
22.06

3C-like protease 1100-1280; PRO_0000036939

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
X-ray Structure at 1.75 A Resolution of a Norovirus Protease Linked to an Active Site Directed Pept…homo-2-mer LGG;2iph 1100-1279

RNA-directed RNA polymerase 1281-1788; PRO_0000036940

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.432b43.1.A1285-1785
63.64