Q04544 (POLG_SOUV3) Southampton virus (strain GI/Human/United Kingdom/Southampton/1991) (SHV)(Hu/NV/SHV/1991/UK)
Genome polyprotein UniProtKBInterProInteractive Modelling
1788 aa; Sequence (Fasta)
Molecule Processing
| Protein p48 | |
| NTPase | |
| Protein p22 | |
| Viral genome-linked protein | |
| 3C-like protease | |
| RNA-directed RNA polymerase |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1129 | For 3CLpro activity | ||
| 1153 | For 3CLpro activity | ||
| 1238 | For 3CLpro activity | ||
| 561-568 | ATP | ||
| 399-400 | Cleavage; by 3CLpro | ||
| 762-763 | Cleavage; by 3CLpro | ||
| 961-962 | Cleavage; by 3CLpro | ||
| 1099-1100 | Cleavage; by 3CLpro | ||
| 1280-1281 | Cleavage; by 3CLpro | ||
| 185-541 | Viral polyprotein, Caliciviridae N-terminal IPR013614PF08405 | ||
| 557-658 | Helicase, superfamily 3, single-stranded DNA/RNA virus IPR000605PF00910 | ||
| 707-1268 | Norovirus peptidase C37 IPR001665PF05416 | ||
| 1314-1743 | RNA-directed RNA polymerase, C-terminal domain IPR001205PF00680 |
Sequence Alignments
NTPase 400-762; PRO_0000036936
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) | Download | Assess |
|---|---|---|---|---|---|---|---|
| monomer | -1.94 | 5grb.1.A | 22.06 |
3C-like protease 1100-1280; PRO_0000036939
| Description | Oligo-state | Ligands | Structure | Range | Download | Assess |
|---|---|---|---|---|---|---|
| X-ray Structure at 1.75 A Resolution of a Norovirus Protease Linked to an Active Site Directed Pept… | homo-2-mer | 2×LGG; | 2iph |
RNA-directed RNA polymerase 1281-1788; PRO_0000036940
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) | Download | Assess |
|---|---|---|---|---|---|---|---|
| monomer | -1.43 | 2b43.1.A | 63.64 |