Q06FY1 (PSBA_PELHO) Pelargonium hortorum (Common geranium) (Pelargonium inquinans xPelargonium zonale)

Photosystem II protein D1 UniProtKBInterProInteractive Modelling

353 aa; Sequence (Fasta) 454 identical sequences

Sequence Features

 118Magnesium (chlorophyll-a ChlzD1 axial ligand); via tele nitrogen.
 170Calcium-manganese-oxide [Ca-4Mn-5O]; calcium.
 170Calcium-manganese-oxide [Ca-4Mn-5O]; manganese 4.
 189Calcium-manganese-oxide [Ca-4Mn-5O]; manganese 1.
 198Magnesium (chlorophyll-a PD1 axial ligand); via tele nitrogen.
 215Iron; shared with heterodimeric partner; via tele nitrogen.
 272Iron; shared with heterodimeric partner; via tele nitrogen.
 332Calcium-manganese-oxide [Ca-4Mn-5O]; manganese 1; via tele nitrogen.
 333Calcium-manganese-oxide [Ca-4Mn-5O]; manganese 3.
 333Calcium-manganese-oxide [Ca-4Mn-5O]; manganese 4.
 342Calcium-manganese-oxide [Ca-4Mn-5O]; manganese 1.
 342Calcium-manganese-oxide [Ca-4Mn-5O]; manganese 2.
 344Calcium-manganese-oxide [Ca-4Mn-5O]; calcium; via carboxylate.
 344Calcium-manganese-oxide [Ca-4Mn-5O]; manganese 2; via carboxylate.
 161Tyrosine radical intermediate.
 190Stabilizes free radical intermediate.
 29-46Helical.
 118-133Helical.
 142-156Helical.
 197-218Helical.
 274-288Helical.
 344-345Cleavage; by CTPA.
 28-327Photosynthetic reaction centre, L/M
IPR000484PF00124

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana Heteromer
P04778; P23321; P56761; P56777; P56778; P56779; P56780; P56782; P56790; P60129; P61839; P62095; P62100; P62109; P83755; Q07473; Q39194; Q9LMQ2; Q9SKI3; Q9XF89;
96×CHL;PHO;FE2; 212×CLA;HEM;5mdx11-340

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer -2.673jcu.1.A11-344
100.00