- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.10 Å
- Oligo State
- hetero-2-2-2-2-2-2-4-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 156 x CLA: CHLOROPHYLL A(Non-covalent)
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.3: 27 residues within 4Å:- Chain A: L.41, A.44, T.45, I.115, F.119, V.123, Y.126, E.130, A.146, Y.147, P.150, L.174, G.175, T.179, P.279, I.283
- Chain D: L.206, A.209, L.210, A.213, I.214, W.254, F.258
- Ligands: CLA.1, CLA.54, PL9.59, LHG.86
15 PLIP interactions:13 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:L.41, A:L.41, A:A.44, A:I.115, A:F.119, A:F.119, A:A.146, A:Y.147, A:Y.147, A:P.150, A:L.174, A:I.283, D:L.206, D:A.213
- Hydrogen bonds: A:Y.147
PHO.55: 27 residues within 4Å:- Chain A: F.206, S.209, L.210, A.213, M.214, L.258, I.259
- Chain D: A.42, A.45, L.46, W.49, V.115, G.119, A.122, L.123, F.126, Q.130, A.146, F.147, P.150, F.154, G.175, V.176, I.179, L.280
- Ligands: CLA.2, CLA.57
23 PLIP interactions:21 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:A.42, D:A.45, D:L.46, D:W.49, D:W.49, D:W.49, D:A.122, D:F.126, D:F.126, D:A.146, D:F.147, D:F.147, D:F.147, D:P.150, D:F.154, D:V.176, D:I.179, D:L.280, D:L.280, A:F.206, A:A.213
- Hydrogen bonds: D:Q.130, D:N.143
PHO.151: 26 residues within 4Å:- Chain W: L.41, A.44, T.45, F.48, F.119, V.123, Y.126, E.130, A.146, Y.147, P.150, L.174, T.179, P.279, I.283
- Chain Z: L.206, A.209, L.210, A.213, I.214, W.254, F.258
- Ligands: CLA.148, CLA.149, PL9.206, LHG.207
15 PLIP interactions:14 interactions with chain W, 1 interactions with chain Z- Hydrophobic interactions: W:L.41, W:L.41, W:A.44, W:F.48, W:F.48, W:F.119, W:F.119, W:A.146, W:Y.147, W:Y.147, W:P.150, W:L.174, W:T.179, Z:A.213
- Hydrogen bonds: W:Y.147
PHO.200: 26 residues within 4Å:- Chain W: F.206, S.209, L.210, A.213, M.214, L.258, I.259
- Chain Z: A.42, W.49, V.115, G.119, A.122, L.123, F.126, Q.130, N.143, A.146, F.147, P.150, F.154, G.175, V.176, I.179, L.280
- Ligands: CLA.150, CLA.203
18 PLIP interactions:2 interactions with chain W, 16 interactions with chain Z- Hydrophobic interactions: W:F.206, W:A.213, Z:A.42, Z:W.49, Z:W.49, Z:A.122, Z:L.123, Z:F.126, Z:F.126, Z:A.146, Z:F.147, Z:F.147, Z:P.150, Z:F.154, Z:V.176, Z:I.179
- Hydrogen bonds: Z:Q.130, Z:N.143
- 20 x BCR: BETA-CAROTENE(Non-covalent)
BCR.5: 16 residues within 4Å:- Chain A: W.20, L.42, T.43, S.46, V.47, I.50, A.51, A.54, I.96, V.102, L.106
- Chain I: F.15
- Ligands: CLA.4, LMG.7, DGD.8, SQD.9
Ligand excluded by PLIPBCR.29: 14 residues within 4Å:- Chain B: M.25, L.29, F.108, I.112, W.115
- Chain M: I.9, A.10
- Ligands: CLA.19, CLA.25, CLA.26, BCR.30, LMG.32, LHG.35
- Chain c: F.19
Ligand excluded by PLIPBCR.30: 13 residues within 4Å:- Chain B: L.29, G.32, W.33, S.36, S.104, G.105
- Ligands: CLA.16, CLA.19, CLA.25, BCR.29, LMG.32, DGD.155, SQD.156
Ligand excluded by PLIPBCR.31: 12 residues within 4Å:- Chain B: F.103, L.106, L.109, A.110, I.112, W.113, Y.117
- Ligands: CLA.18, CLA.27, CLA.28, LHG.33, SQD.156
Ligand excluded by PLIPBCR.50: 15 residues within 4Å:- Chain C: V.116, L.117, I.120, S.121
- Chain V: V.51, V.54, G.55, N.58
- Ligands: CLA.48, CLA.49, BCR.147, CLA.298, CLA.301, LHG.305
- Chain i: L.267
Ligand excluded by PLIPBCR.51: 16 residues within 4Å:- Chain C: I.209, L.213, D.232, I.233, G.236, H.237, L.240, A.263, L.264
- Chain I: F.23, L.24
- Ligands: CLA.37, CLA.41, CLA.42, CLA.43, LHG.128
Ligand excluded by PLIPBCR.62: 11 residues within 4Å:- Chain D: Y.43, F.44, G.47, F.50, L.111, F.114
- Chain F: P.23, T.24, F.27
- Chain J: I.25
- Ligands: LMG.60
Ligand excluded by PLIPBCR.83: 14 residues within 4Å:- Chain B: L.208
- Chain H: A.46, M.47, L.49, F.50, V.52, L.67
- Chain T: I.79, L.83
- Ligands: CLA.13, CLA.14, CLA.15, CLA.21, CLA.22
Ligand excluded by PLIPBCR.85: 13 residues within 4Å:- Chain J: I.22
- Chain K: I.43, F.46, F.47, L.49, L.50, F.52, V.53
- Chain V: I.13, S.16, S.17, L.20
- Ligands: BCR.147
Ligand excluded by PLIPBCR.147: 18 residues within 4Å:- Chain C: A.55, L.59, F.62, L.119, A.123, G.126
- Chain K: L.33, F.47, A.51, W.54
- Chain V: L.12, S.16, W.47, V.51
- Ligands: CLA.46, CLA.47, BCR.50, BCR.85
Ligand excluded by PLIPBCR.153: 16 residues within 4Å:- Chain 4: F.15
- Chain W: W.20, L.42, T.43, S.46, V.47, I.50, A.51, A.54, I.96, V.102, L.106
- Ligands: LMG.34, CLA.152, DGD.155, SQD.156
Ligand excluded by PLIPBCR.176: 14 residues within 4Å:- Chain 8: I.9, A.10
- Chain Q: F.19
- Chain X: M.25, L.29, F.108, I.112, W.115
- Ligands: LHG.127, CLA.166, CLA.172, CLA.173, BCR.177, LMG.179
Ligand excluded by PLIPBCR.177: 12 residues within 4Å:- Chain X: L.29, G.32, W.33, S.36, G.105
- Ligands: DGD.8, SQD.9, CLA.163, CLA.166, CLA.172, BCR.176, LMG.179
Ligand excluded by PLIPBCR.178: 12 residues within 4Å:- Chain X: F.103, L.106, L.109, A.110, I.112, W.113, Y.117
- Ligands: SQD.9, CLA.165, CLA.174, CLA.175, LHG.180
Ligand excluded by PLIPBCR.195: 14 residues within 4Å:- Chain Y: V.116, I.120, S.121
- Ligands: CLA.193, CLA.194, BCR.199, CLA.315, CLA.318, LHG.322
- Chain h: V.51, V.54, G.55, N.58
- Chain j: L.267
Ligand excluded by PLIPBCR.196: 17 residues within 4Å:- Chain 4: L.24
- Chain Y: I.209, L.213, I.224, V.227, D.232, I.233, G.236, H.237, L.240, A.263, L.264
- Ligands: CLA.182, CLA.186, CLA.187, CLA.188, LHG.270
Ligand excluded by PLIPBCR.199: 14 residues within 4Å:- Chain 6: L.33, F.47, A.51
- Chain Y: A.55, L.59, F.62, L.119, A.123, G.126
- Ligands: CLA.191, CLA.192, BCR.195, BCR.232
- Chain h: S.16
Ligand excluded by PLIPBCR.205: 13 residues within 4Å:- Chain 1: P.23, T.24, F.27
- Chain 5: I.25
- Chain Z: Y.43, F.44, G.47, G.48, F.50, W.105, L.111, F.114
- Ligands: LMG.208
Ligand excluded by PLIPBCR.231: 11 residues within 4Å:- Chain 3: M.43, A.46, M.47, L.49, F.50, V.52
- Ligands: CLA.160, CLA.162, CLA.168, CLA.169
- Chain f: L.83
Ligand excluded by PLIPBCR.232: 13 residues within 4Å:- Chain 5: I.22
- Chain 6: I.43, F.46, F.47, L.49, L.50, F.52, V.53
- Ligands: BCR.199
- Chain h: I.13, S.16, S.17, L.20
Ligand excluded by PLIP- 6 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.6: 19 residues within 4Å:- Chain A: N.266, N.267, S.270, F.273, F.274, A.277, W.278
- Chain C: Q.28, A.34, W.35, W.36
- Chain D: N.231, F.233, R.234
- Chain K: L.48, L.49, F.52
- Ligands: LHG.12, CLA.44
11 PLIP interactions:3 interactions with chain K, 5 interactions with chain A, 1 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: K:L.48, K:L.49, K:F.52, A:W.278, A:W.278, A:W.278, C:W.35
- Hydrogen bonds: A:N.266, A:S.270, D:N.231
- Salt bridges: D:R.234
SQD.9: 14 residues within 4Å:- Chain A: W.20, N.26, R.27, L.28, I.30, I.38
- Chain Q: F.18, F.22
- Chain X: L.109, W.113
- Ligands: BCR.5, CLA.175, BCR.177, BCR.178
12 PLIP interactions:2 interactions with chain Q, 8 interactions with chain A, 2 interactions with chain X- Hydrophobic interactions: Q:F.18, Q:F.22, A:W.20, A:W.20, A:N.26, A:L.28, A:L.28, A:I.30, X:L.109
- Hydrogen bonds: A:N.26, A:R.27, X:W.113
SQD.88: 14 residues within 4Å:- Chain 7: E.8
- Chain 8: A.20, F.21, I.24, K.28
- Chain L: R.15
- Chain M: L.16, T.19, L.23, Y.26, V.30
- Chain Q: F.8
- Ligands: LHG.127, CLA.173
14 PLIP interactions:1 interactions with chain 7, 5 interactions with chain M, 6 interactions with chain 8, 1 interactions with chain L, 1 interactions with chain Q- Hydrogen bonds: 7:E.8, L:R.15
- Hydrophobic interactions: M:L.16, M:L.23, M:L.23, M:Y.26, M:V.30, 8:A.20, 8:F.21, 8:I.24, Q:F.8
- Salt bridges: 8:K.28, 8:K.28, 8:K.28
SQD.89: 15 residues within 4Å:- Chain 7: R.15
- Chain 8: L.16, T.19, L.23, Y.26, V.30
- Chain L: E.8
- Chain M: A.20, F.21, I.24, I.25, K.28
- Ligands: CLA.26, LHG.35
- Chain c: F.8
15 PLIP interactions:8 interactions with chain M, 1 interactions with chain c, 1 interactions with chain L, 4 interactions with chain 8, 1 interactions with chain 7- Hydrophobic interactions: M:A.20, M:F.21, M:I.24, c:F.8, 8:L.16, 8:L.23, 8:Y.26, 8:V.30
- Hydrogen bonds: M:K.28, M:K.28, L:E.8, 7:R.15
- Salt bridges: M:K.28, M:K.28, M:K.28
SQD.156: 14 residues within 4Å:- Chain B: L.109, W.113
- Chain W: W.20, N.26, R.27, L.28, I.30, I.38
- Ligands: CLA.28, BCR.30, BCR.31, BCR.153
- Chain c: F.18, F.22
13 PLIP interactions:9 interactions with chain W, 2 interactions with chain c, 2 interactions with chain B- Hydrophobic interactions: W:W.20, W:W.20, W:N.26, W:L.28, W:L.28, W:I.30, W:I.38, c:F.18, c:F.22, B:L.109
- Hydrogen bonds: W:N.26, W:R.27, B:W.113
SQD.201: 18 residues within 4Å:- Chain 6: L.48, F.52
- Chain W: N.266, N.267, S.270, F.273, F.274, A.277, W.278, V.281
- Chain Y: Q.28, A.34, W.35, W.36
- Chain Z: N.231, F.233, R.234
- Ligands: LHG.159
15 PLIP interactions:10 interactions with chain W, 2 interactions with chain 6, 1 interactions with chain Y, 2 interactions with chain Z- Hydrophobic interactions: W:F.273, W:F.274, W:F.274, W:W.278, W:W.278, W:W.278, W:V.281, 6:L.48, 6:F.52, Y:W.35
- Hydrogen bonds: W:N.266, W:N.267, W:S.270, Z:N.231
- Salt bridges: Z:R.234
- 8 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.7: 7 residues within 4Å:- Chain A: I.96, V.102
- Chain I: M.1, L.4
- Chain X: N.87
- Ligands: BCR.5, DGD.8
1 PLIP interactions:1 interactions with chain I- Hydrophobic interactions: I:L.4
LMG.32: 14 residues within 4Å:- Chain B: Y.40, A.327, G.328, N.332, F.458
- Chain L: F.36
- Chain M: N.4, L.13, F.14
- Ligands: CLA.19, CLA.25, CLA.26, BCR.29, BCR.30
10 PLIP interactions:4 interactions with chain B, 3 interactions with chain M, 3 interactions with chain L- Hydrophobic interactions: B:F.458, M:L.13, M:F.14, L:F.36, L:F.36, L:F.36
- Hydrogen bonds: B:Y.40, B:Y.40, B:N.332, M:N.4
LMG.34: 7 residues within 4Å:- Chain 4: M.1, L.4
- Chain B: N.87
- Chain W: I.96, V.102
- Ligands: BCR.153, DGD.155
1 PLIP interactions:1 interactions with chain 4- Hydrophobic interactions: 4:L.4
LMG.36: 24 residues within 4Å:- Chain A: F.93, W.97, E.98, L.121
- Chain C: L.213, L.214, K.215, S.216, P.217, E.221, W.223, F.438
- Chain I: K.5, Y.9, F.19, I.20
- Chain S: T.87, G.91, L.92, F.94, G.95
- Ligands: CLA.4, CLA.41, DGD.52
15 PLIP interactions:5 interactions with chain I, 5 interactions with chain S, 1 interactions with chain A, 4 interactions with chain C- Hydrophobic interactions: I:F.19, I:I.20, I:I.20, S:F.94, C:W.223, C:W.223, C:W.223, C:F.438
- Hydrogen bonds: I:K.5, I:Y.9, S:T.87, S:T.87, S:G.91, S:L.92, A:W.97
LMG.60: 13 residues within 4Å:- Chain D: F.50, Y.68, G.71, C.72, N.73, F.74
- Chain F: Q.35
- Chain J: F.29, G.31, S.32
- Ligands: CLA.2, CLA.57, BCR.62
11 PLIP interactions:7 interactions with chain D, 3 interactions with chain J, 1 interactions with chain F- Hydrophobic interactions: D:F.50, D:F.50, D:F.74, D:F.74, D:F.74, J:F.29
- Hydrogen bonds: D:Y.68, D:N.73, J:G.31, J:S.32, F:Q.35
LMG.154: 24 residues within 4Å:- Chain 4: K.5, Y.9, F.19, I.20
- Chain W: F.93, W.97, E.98, L.121
- Chain Y: L.213, L.214, K.215, S.216, P.217, E.221, W.223, F.284, F.438
- Ligands: CLA.152, CLA.186, DGD.197
- Chain e: T.87, G.91, F.94, G.95
17 PLIP interactions:5 interactions with chain e, 7 interactions with chain Y, 3 interactions with chain 4, 2 interactions with chain W- Hydrophobic interactions: e:F.94, Y:P.217, Y:W.223, Y:W.223, Y:W.223, Y:F.284, Y:F.438, 4:I.20
- Hydrogen bonds: e:T.87, e:T.87, e:G.91, e:L.92, Y:E.221, 4:K.5, 4:Y.9, W:W.97, W:E.98
LMG.179: 14 residues within 4Å:- Chain 7: F.36
- Chain 8: N.4, F.14
- Chain X: Y.40, A.327, G.328, N.332, F.458
- Chain Z: L.285
- Ligands: CLA.166, CLA.172, CLA.173, BCR.176, BCR.177
11 PLIP interactions:5 interactions with chain X, 1 interactions with chain Z, 2 interactions with chain 8, 3 interactions with chain 7- Hydrophobic interactions: X:F.458, Z:L.285, 8:F.14, 7:F.36, 7:F.36, 7:F.36
- Hydrogen bonds: X:Y.40, X:Y.40, X:N.332, X:N.332, 8:N.4
LMG.208: 11 residues within 4Å:- Chain 5: F.29, G.31, S.32
- Chain Z: F.50, Y.68, G.71, C.72, N.73, F.74
- Ligands: CLA.150, BCR.205
8 PLIP interactions:5 interactions with chain Z, 3 interactions with chain 5- Hydrophobic interactions: Z:F.50, Z:F.50, Z:F.74, Z:F.74, 5:F.29
- Hydrogen bonds: Z:Y.68, 5:G.31, 5:S.32
- 6 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.8: 11 residues within 4Å:- Chain A: V.102, D.103
- Chain O: K.162, Q.202
- Chain X: W.75, P.88, L.90
- Ligands: BCR.5, LMG.7, CLA.165, BCR.177
6 PLIP interactions:3 interactions with chain O, 2 interactions with chain A, 1 interactions with chain X- Hydrogen bonds: O:K.162, O:K.162, O:Q.202, A:D.103, A:D.103
- Hydrophobic interactions: X:L.90
DGD.52: 24 residues within 4Å:- Chain A: L.91, L.120, T.155, I.163
- Chain C: P.217, G.219, G.220, G.222, W.223, V.225, S.226, V.227, D.228, F.284, C.288, F.292, N.293, N.294, D.360, L.361, R.362, F.435, F.438
- Ligands: LMG.36
14 PLIP interactions:13 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:W.223, C:F.284, C:F.284, C:F.284, C:F.435, C:F.435, C:F.438, A:L.120
- Hydrogen bonds: C:G.220, C:V.227, C:D.360, C:D.360, C:R.362, C:R.362
DGD.84: 28 residues within 4Å:- Chain B: F.193, F.246, F.250, V.251, G.254, Y.258, Y.273, Q.274, Q.277, Y.279, T.452, F.463
- Chain D: A.87, H.88, L.117, A.120, F.121, I.124, I.160, L.163, G.164, A.291, L.292
- Chain H: L.58, Y.61, N.62, V.72
- Ligands: CLA.14
21 PLIP interactions:11 interactions with chain D, 7 interactions with chain B, 3 interactions with chain H- Hydrophobic interactions: D:L.117, D:A.120, D:F.121, D:I.124, D:I.160, D:L.163, D:L.163, D:A.291, D:L.292, B:F.246, B:F.250, B:V.251, B:T.452, B:F.463, H:L.58, H:Y.61, H:Y.61
- Hydrogen bonds: D:H.88, D:H.88, B:Q.274, B:Q.277
DGD.155: 9 residues within 4Å:- Chain B: W.75, P.88
- Chain W: V.102, D.103
- Ligands: CLA.18, BCR.30, LMG.34, BCR.153
- Chain a: K.162
5 PLIP interactions:3 interactions with chain a, 2 interactions with chain W- Hydrogen bonds: a:K.162, a:K.162, a:Q.202, W:D.103, W:D.103
DGD.197: 25 residues within 4Å:- Chain W: L.91, L.120, T.155, L.159, I.163
- Chain Y: P.217, G.219, G.220, W.223, V.225, S.226, V.227, D.228, F.284, C.288, F.292, N.293, N.294, T.295, D.360, L.361, R.362, F.435, F.438
- Ligands: LMG.154
19 PLIP interactions:16 interactions with chain Y, 3 interactions with chain W- Hydrophobic interactions: Y:W.223, Y:F.284, Y:F.438, W:L.120, W:T.155, W:L.159
- Hydrogen bonds: Y:P.217, Y:G.220, Y:W.223, Y:S.226, Y:D.228, Y:N.294, Y:T.295, Y:T.295, Y:T.295, Y:D.360, Y:D.360, Y:R.362, Y:R.362
DGD.209: 27 residues within 4Å:- Chain 3: L.58, Y.61, N.62, V.72
- Chain X: F.193, F.246, F.250, V.251, G.254, Y.258, Q.274, Q.277, Y.279, T.452, F.463
- Chain Z: A.87, H.88, L.117, A.120, F.121, I.124, I.160, L.163, G.164, L.292
- Ligands: CLA.161, CLA.167
21 PLIP interactions:7 interactions with chain X, 11 interactions with chain Z, 3 interactions with chain 3- Hydrophobic interactions: X:F.246, X:F.250, X:V.251, X:T.452, X:F.463, Z:L.117, Z:A.120, Z:F.121, Z:F.121, Z:I.124, Z:I.160, Z:L.163, Z:L.163, Z:L.292, 3:Y.61, 3:Y.61
- Hydrogen bonds: X:Q.274, X:Q.277, Z:H.88, Z:H.88, 3:N.62
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.10: 5 residues within 4Å:- Chain A: H.215, H.272
- Chain D: H.215, H.269
- Ligands: BCT.56
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain A- Metal complexes: D:H.215, D:H.269, A:H.215, A:H.272
FE2.157: 5 residues within 4Å:- Chain W: H.215, H.272
- Chain Z: H.215, H.269
- Ligands: BCT.202
4 PLIP interactions:2 interactions with chain W, 2 interactions with chain Z- Metal complexes: W:H.215, W:H.272, Z:H.215, Z:H.269
- 26 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.11: 19 residues within 4Å:- Chain A: A.233, N.234
- Chain B: Y.6, R.7, L.461, F.464, W.468
- Chain D: R.140, Y.142, F.270, F.274, V.277, T.278
- Chain L: L.28
- Ligands: CLA.19, CLA.23, CLA.25, PL9.59, LHG.87
Ligand excluded by PLIPLHG.12: 19 residues within 4Å:- Chain A: R.140, W.142, F.273, A.276, A.277, V.280, W.284
- Chain C: W.36, W.443, R.447
- Chain D: E.220, N.221, A.230, N.231, T.232, F.233
- Ligands: SQD.6, CLA.44, CLA.46
Ligand excluded by PLIPLHG.33: 11 residues within 4Å:- Chain B: G.89, L.90, W.91, F.151, F.156, Y.162
- Ligands: CLA.16, CLA.17, CLA.18, CLA.28, BCR.31
Ligand excluded by PLIPLHG.35: 12 residues within 4Å:- Chain 7: R.15, Y.19
- Chain 8: Y.26
- Chain B: L.29, F.108, W.115, V.116
- Ligands: CLA.26, BCR.29, SQD.89
- Chain c: F.19, F.23
Ligand excluded by PLIPLHG.53: 12 residues within 4Å:- Chain C: F.246, I.249, W.250, F.257, A.258, W.259
- Ligands: CLA.42, LHG.128, CLA.139, CLA.140, LUT.143, LHG.146
Ligand excluded by PLIPLHG.80: 10 residues within 4Å:- Chain G: V.56, Y.78, K.217, R.220, L.221, F.224
- Ligands: CHL.63, CLA.73, CLA.75, XAT.82
Ligand excluded by PLIPLHG.86: 26 residues within 4Å:- Chain A: L.28, M.37, N.234
- Chain D: F.258, V.260, A.261, F.262, S.263, N.264, W.267
- Chain L: N.14, T.16, Y.19, W.20, L.23
- Chain Q: L.10, T.13, L.14, I.17, A.20, I.21
- Ligands: CLA.1, PHO.3, CLA.54, PL9.59, LHG.87
Ligand excluded by PLIPLHG.87: 28 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.4, W.5, Y.6
- Chain D: W.267, F.270, F.271, F.274
- Chain L: E.12, L.13, N.14, S.17, W.20, G.21, L.23, L.24, V.27
- Chain M: V.17, P.18, F.21, L.22
- Ligands: LHG.11, CLA.23, CLA.26, CLA.54, PL9.59, LHG.86
Ligand excluded by PLIPLHG.108: 10 residues within 4Å:- Chain N: Y.78, K.217, R.220, L.221, F.224
- Ligands: CLA.65, XAT.90, CHL.91, CLA.101, CLA.103
Ligand excluded by PLIPLHG.126: 5 residues within 4Å:- Chain P: K.244, R.247
- Ligands: CLA.109, CLA.110, CLA.118
Ligand excluded by PLIPLHG.127: 12 residues within 4Å:- Chain L: R.15, Y.19
- Chain M: Y.26
- Chain Q: F.19, F.23
- Chain X: L.29, F.108, W.115, V.116
- Ligands: SQD.88, CLA.173, BCR.176
Ligand excluded by PLIPLHG.128: 18 residues within 4Å:- Chain C: A.258, W.259, R.262
- Chain I: F.21, L.24
- Chain S: F.106, G.107, G.110, L.111, W.113, F.116, F.117, T.120
- Ligands: CLA.42, BCR.51, LHG.53, CLA.139, CLA.140
Ligand excluded by PLIPLHG.146: 11 residues within 4Å:- Chain U: Y.77, K.215, R.218, L.219, F.222
- Ligands: LHG.53, XAT.129, CHL.130, CLA.131, CLA.139, CLA.141
Ligand excluded by PLIPLHG.158: 18 residues within 4Å:- Chain W: A.233, N.234
- Chain X: Y.6, R.7, L.461, F.464, W.468
- Chain Z: R.140, Y.142, F.270, F.274, V.277, T.278
- Ligands: CLA.166, CLA.170, CLA.172, LHG.181, PL9.206
Ligand excluded by PLIPLHG.159: 20 residues within 4Å:- Chain W: R.140, W.142, R.269, F.273, A.276, A.277, V.280
- Chain Y: W.36, A.37, W.443, R.447
- Chain Z: E.220, N.221, A.230, N.231, T.232, F.233
- Ligands: CLA.189, CLA.191, SQD.201
Ligand excluded by PLIPLHG.180: 11 residues within 4Å:- Chain X: G.89, L.90, W.91, F.156, Y.162
- Ligands: CLA.163, CLA.164, CLA.165, CLA.174, CLA.175, BCR.178
Ligand excluded by PLIPLHG.181: 28 residues within 4Å:- Chain 7: E.12, L.13, N.14, S.17, W.20, G.21, L.23, L.24, V.27
- Chain 8: V.17, P.18, F.21, L.22
- Chain W: S.232, N.234
- Chain X: P.4, W.5, Y.6
- Chain Z: W.267, F.270, F.271, F.274
- Ligands: CLA.149, LHG.158, CLA.170, CLA.173, PL9.206, LHG.207
Ligand excluded by PLIPLHG.198: 11 residues within 4Å:- Chain Y: F.246, W.250, F.257, A.258, W.259
- Ligands: CLA.187, LHG.270, CLA.281, CLA.282, LUT.285, LHG.288
Ligand excluded by PLIPLHG.207: 27 residues within 4Å:- Chain 7: N.14, T.16, Y.19, W.20, L.23
- Chain W: L.28, M.37, N.234
- Chain Z: I.257, F.258, V.260, A.261, F.262, S.263, N.264, W.267
- Ligands: CLA.148, CLA.149, PHO.151, LHG.181, PL9.206
- Chain c: L.10, T.13, L.14, I.17, A.20, I.21
Ligand excluded by PLIPLHG.228: 10 residues within 4Å:- Chain 2: V.56, Y.78, K.217, R.220, L.221, F.224
- Ligands: CHL.211, CLA.221, CLA.223, XAT.230
Ligand excluded by PLIPLHG.251: 10 residues within 4Å:- Chain 9: Y.78, K.217, R.220, L.221, F.224
- Ligands: CLA.213, XAT.233, CHL.234, CLA.244, CLA.246
Ligand excluded by PLIPLHG.269: 7 residues within 4Å:- Ligands: CLA.252, CLA.253, CLA.261, CLA.263
- Chain b: P.56, K.244, L.248
Ligand excluded by PLIPLHG.270: 17 residues within 4Å:- Chain 4: L.24
- Chain Y: A.258, W.259, R.262
- Ligands: CLA.187, BCR.196, LHG.198, CLA.281, CLA.282
- Chain e: F.106, G.107, G.110, L.111, W.113, F.116, F.117, T.120
Ligand excluded by PLIPLHG.288: 10 residues within 4Å:- Ligands: LHG.198, XAT.271, CHL.272, CLA.273, CLA.281, CLA.283
- Chain g: Y.77, K.215, L.219, F.222
Ligand excluded by PLIPLHG.305: 15 residues within 4Å:- Chain C: I.120, V.124, F.144
- Chain V: I.48
- Ligands: CLA.49, BCR.50, CHL.289, CLA.290, CLA.298, LUT.302
- Chain i: R.68, K.227, R.230, L.231, F.234
Ligand excluded by PLIPLHG.322: 17 residues within 4Å:- Chain Y: I.120, V.124, F.144
- Ligands: CLA.194, BCR.195, CHL.306, CLA.307, CLA.315, CLA.317, LUT.319
- Chain h: I.48
- Chain j: R.68, Y.93, K.227, R.230, L.231, F.234
Ligand excluded by PLIP- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.56: 8 residues within 4Å:- Chain A: H.215, V.219, Y.246, H.272
- Chain D: H.215, Y.245, H.269
- Ligands: FE2.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.215
BCT.202: 8 residues within 4Å:- Chain W: H.215, V.219, Y.246, H.272
- Chain Z: H.215, Y.245, H.269
- Ligands: FE2.157
1 PLIP interactions:1 interactions with chain W- Hydrogen bonds: W:H.215
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.59: 33 residues within 4Å:- Chain A: F.48, I.49, F.52, I.176
- Chain D: M.199, M.200, A.203, G.204, L.210, I.214, H.215, T.218, Y.245, M.247, A.250, W.254, A.261, F.262, L.268, F.271, V.275, T.278
- Chain L: W.20, L.24, V.27, V.30, L.31
- Chain Q: L.10
- Ligands: PHO.3, LHG.11, CLA.54, LHG.86, LHG.87
23 PLIP interactions:14 interactions with chain D, 5 interactions with chain L, 4 interactions with chain A- Hydrophobic interactions: D:M.200, D:T.218, D:Y.245, D:A.250, D:W.254, D:F.262, D:F.262, D:F.262, D:L.268, D:F.271, D:V.275, D:T.278, L:W.20, L:L.24, L:V.27, L:V.30, L:L.31, A:F.52, A:F.52, A:F.52, A:I.176
- Hydrogen bonds: D:H.215, D:F.262
PL9.206: 33 residues within 4Å:- Chain 7: W.20, L.24, V.27, V.30, L.31
- Chain W: F.48, I.49, F.52, I.176
- Chain Z: M.199, M.200, A.203, G.204, G.207, L.210, I.214, H.215, T.218, M.247, A.250, N.251, W.254, A.261, F.262, L.268, F.271, T.278
- Ligands: CLA.149, PHO.151, LHG.158, LHG.181, LHG.207
- Chain c: L.10
21 PLIP interactions:12 interactions with chain Z, 4 interactions with chain 7, 3 interactions with chain W, 2 interactions with chain c- Hydrophobic interactions: Z:M.200, Z:A.203, Z:T.218, Z:W.254, Z:F.262, Z:F.262, Z:F.262, Z:L.268, Z:F.271, Z:T.278, 7:W.20, 7:L.24, 7:V.30, 7:L.31, W:I.49, W:F.52, W:I.176, c:L.10, c:L.10
- Hydrogen bonds: Z:H.215, Z:F.262
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.61: 8 residues within 4Å:- Chain E: R.18, I.22, H.23, T.26, I.27
- Chain F: W.14, H.18, V.22
9 PLIP interactions:6 interactions with chain E, 3 interactions with chain F,- Hydrophobic interactions: E:I.22, E:T.26, E:I.27, F:V.22
- Salt bridges: E:R.18
- pi-Stacking: E:H.23, F:H.18
- Metal complexes: E:H.23, F:H.18
HEM.210: 7 residues within 4Å:- Chain 0: R.18, H.23, T.26, L.30
- Chain 1: W.14, H.18, V.22
6 PLIP interactions:2 interactions with chain 0, 4 interactions with chain 1,- Hydrophobic interactions: 0:L.30, 1:V.22
- Salt bridges: 0:R.18
- pi-Stacking: 1:W.14
- pi-Cation interactions: 1:H.18
- Metal complexes: 1:H.18
- 52 x CHL: CHLOROPHYLL B(Non-covalent)
CHL.63: 19 residues within 4Å:- Chain G: V.56, K.57, Y.58, L.59, G.60, P.61, F.62, Y.78, W.80, K.217, F.224
- Chain U: W.161, Q.164, G.169
- Ligands: CLA.64, LHG.80, CHL.81, XAT.82, CHL.137
7 PLIP interactions:7 interactions with chain G,- Hydrophobic interactions: G:V.56, G:L.59, G:F.62, G:Y.78, G:W.80, G:W.80
- Metal complexes: G:Y.58
CHL.67: 8 residues within 4Å:- Chain G: S.151, L.152, V.153, H.154, Q.156, A.160, T.164
- Ligands: CHL.68
5 PLIP interactions:5 interactions with chain G,- Hydrophobic interactions: G:V.153, G:Q.156
- Hydrogen bonds: G:V.153, G:Q.156
- Metal complexes: G:V.153
CHL.68: 10 residues within 4Å:- Chain G: W.105, L.144, V.153, I.161, T.164
- Ligands: CLA.66, CHL.67, CHL.69, LUT.78, NEX.79
5 PLIP interactions:5 interactions with chain G,- Hydrophobic interactions: G:W.105, G:L.144, G:L.144, G:V.153, G:I.161
CHL.69: 13 residues within 4Å:- Chain G: F.132, G.135, S.136, F.230
- Chain N: F.263, V.264, P.265
- Ligands: CLA.65, CHL.68, CHL.71, LUT.78, XAT.90, CHL.91
4 PLIP interactions:2 interactions with chain G, 2 interactions with chain N,- Hydrophobic interactions: G:F.230, N:F.263, N:P.265
- Hydrogen bonds: G:G.135
CHL.70: 17 residues within 4Å:- Chain G: R.104, L.108, V.172, Y.175, R.176, G.179, N.180, G.181, P.182, L.183, A.186, L.189, F.196
- Ligands: CLA.66, CLA.72, LUT.77, NEX.79
15 PLIP interactions:15 interactions with chain G,- Hydrophobic interactions: G:L.108, G:V.172, G:R.176, G:P.182, G:L.183, G:L.183, G:A.186, G:F.196, G:F.196, G:F.196
- Hydrogen bonds: G:R.104, G:L.183
- pi-Stacking: G:F.196, G:F.196, G:F.196
CHL.71: 18 residues within 4Å:- Chain G: L.98, I.101, H.102, W.105, Q.165, V.166, M.169, G.170, E.173, R.176
- Chain N: W.80, T.82
- Ligands: CLA.65, CHL.69, XAT.90, CHL.91, CLA.92, CLA.132
9 PLIP interactions:9 interactions with chain G,- Hydrophobic interactions: G:I.101, G:W.105, G:W.105, G:V.166
- Hydrogen bonds: G:Q.165
- Salt bridges: G:R.176
- pi-Cation interactions: G:R.176, G:R.176
- Metal complexes: G:E.173
CHL.81: 21 residues within 4Å:- Chain G: W.257, A.260, T.261, F.263, V.264
- Chain U: W.130, F.131, K.132, G.134, S.135, I.137, F.138, I.157, Q.164, F.228, I.232
- Ligands: CHL.63, XAT.82, CLA.132, CHL.135, CHL.137
13 PLIP interactions:3 interactions with chain G, 10 interactions with chain U,- Hydrophobic interactions: G:W.257, G:A.260, G:V.264, U:W.130, U:F.131, U:I.137, U:I.157, U:F.228, U:F.228, U:I.232
- Hydrogen bonds: U:G.134, U:S.135, U:Q.164
CHL.91: 14 residues within 4Å:- Chain N: V.56, K.57, Y.58, L.59, P.61, F.62, Y.78, W.80
- Ligands: CLA.65, CHL.69, CHL.71, XAT.90, CLA.92, LHG.108
7 PLIP interactions:7 interactions with chain N,- Hydrophobic interactions: N:V.56, N:L.59, N:F.62, N:Y.78, N:W.80, N:W.80
- Metal complexes: N:Y.58
CHL.95: 12 residues within 4Å:- Chain N: S.151, L.152, V.153, H.154, Q.156, S.157, A.160, T.164
- Ligands: CLA.94, CHL.96
- Chain i: L.134, Y.137
9 PLIP interactions:6 interactions with chain N, 3 interactions with chain i,- Hydrophobic interactions: N:H.154, N:Q.156, N:T.164, i:L.134, i:Y.137, i:Y.137
- Hydrogen bonds: N:Q.156, N:S.157
- Metal complexes: N:V.153
CHL.96: 10 residues within 4Å:- Chain N: W.105, L.144, I.161, T.164, Q.165
- Ligands: CLA.94, CHL.95, CHL.97, LUT.106, NEX.107
4 PLIP interactions:4 interactions with chain N,- Hydrophobic interactions: N:W.105, N:L.144, N:L.144, N:I.161
CHL.97: 14 residues within 4Å:- Chain N: W.131, F.132, K.133, G.135, S.136, Q.165, F.230
- Chain U: W.255, A.258
- Ligands: CHL.96, CHL.99, LUT.106, XAT.129, CHL.130
8 PLIP interactions:6 interactions with chain N, 2 interactions with chain U,- Hydrophobic interactions: N:W.131, N:F.132, N:F.230, U:W.255, U:W.255
- Hydrogen bonds: N:G.135, N:S.136, N:Q.165
CHL.98: 18 residues within 4Å:- Chain N: R.104, L.108, V.172, Y.175, R.176, G.179, N.180, G.181, P.182, L.183, E.185, A.186, P.192, F.196
- Ligands: CLA.94, CLA.100, LUT.105, NEX.107
14 PLIP interactions:14 interactions with chain N,- Hydrophobic interactions: N:L.108, N:Y.175, N:Y.175, N:R.176, N:P.182, N:L.183, N:L.183, N:L.183, N:A.186, N:P.192, N:P.192, N:F.196, N:F.196, N:F.196
CHL.99: 19 residues within 4Å:- Chain N: E.97, L.98, I.101, H.102, W.105, Q.165, M.169, E.173, R.176, F.227
- Chain U: W.79, T.81
- Ligands: CLA.65, CLA.92, CLA.93, CHL.97, XAT.129, CHL.130, CLA.131
10 PLIP interactions:10 interactions with chain N,- Hydrophobic interactions: N:L.98, N:W.105, N:W.105, N:W.105, N:E.173, N:F.227
- Salt bridges: N:R.176
- pi-Cation interactions: N:R.176
- Metal complexes: N:E.173, N:E.173
CHL.113: 11 residues within 4Å:- Chain P: E.172, S.177, L.184, F.186, L.191, I.194, E.195, V.198
- Ligands: CLA.112, CHL.114, NEX.125
5 PLIP interactions:5 interactions with chain P,- Hydrophobic interactions: P:E.172, P:E.172, P:L.184, P:L.191, P:V.198
CHL.114: 11 residues within 4Å:- Chain P: W.165, Q.166, D.167, A.168, G.169, K.170, L.173, E.195
- Ligands: CLA.111, CHL.113, XAT.124
4 PLIP interactions:4 interactions with chain P,- Hydrophobic interactions: P:L.173
- Hydrogen bonds: P:G.169, P:K.170
- Salt bridges: P:K.170
CHL.115: 13 residues within 4Å:- Chain P: I.142, R.145, W.146, I.202, Q.205, R.206, E.209, P.218, F.222, F.223
- Ligands: CLA.117, LUT.123, NEX.125
12 PLIP interactions:12 interactions with chain P,- Hydrophobic interactions: P:I.202, P:R.206, P:E.209, P:P.218, P:P.218, P:F.222, P:F.222, P:F.223
- Hydrogen bonds: P:R.206
- pi-Stacking: P:F.223, P:F.223
- pi-Cation interactions: P:R.206
CHL.121: 5 residues within 4Å:- Chain P: W.271, H.274, L.275
- Ligands: CLA.120, LUT.123
1 PLIP interactions:1 interactions with chain P,- Metal complexes: P:H.274
CHL.130: 14 residues within 4Å:- Chain U: P.55, K.56, Y.57, L.58, G.59, P.60, F.61, Y.77, W.79
- Ligands: CHL.97, CHL.99, XAT.129, CLA.131, LHG.146
4 PLIP interactions:4 interactions with chain U,- Hydrophobic interactions: U:P.55, U:L.58, U:F.61
- Metal complexes: U:Y.57
CHL.134: 13 residues within 4Å:- Chain U: N.150, I.152, H.153, A.154, Q.155, S.156, A.159, I.160
- Ligands: CHL.135
- Chain b: Y.179, Q.182, P.183, L.184
10 PLIP interactions:9 interactions with chain U, 1 interactions with chain b,- Hydrophobic interactions: U:I.152, U:I.152, U:A.154, U:I.160, b:Q.182
- Hydrogen bonds: U:I.152, U:Q.155, U:S.156
- pi-Stacking: U:H.153
- Metal complexes: U:I.152
CHL.135: 12 residues within 4Å:- Chain U: W.104, L.143, I.152, I.160, V.163, Q.164, M.168
- Ligands: CHL.81, CLA.133, CHL.134, LUT.144, NEX.145
5 PLIP interactions:5 interactions with chain U,- Hydrophobic interactions: U:W.104, U:L.143, U:L.143, U:I.152, U:I.160
CHL.136: 18 residues within 4Å:- Chain U: R.103, W.104, L.107, I.171, Y.174, R.175, G.178, G.179, P.180, G.182, P.187, P.190, A.193, F.194, P.196
- Ligands: CLA.138, LUT.143, NEX.145
9 PLIP interactions:9 interactions with chain U,- Hydrophobic interactions: U:I.171, U:Y.174, U:R.175, U:P.180, U:P.190, U:F.194, U:P.196
- Hydrogen bonds: U:R.103
- pi-Stacking: U:F.194
CHL.137: 18 residues within 4Å:- Chain G: W.80, T.82
- Chain U: E.96, L.97, I.100, H.101, W.104, Q.164, M.168, G.169, E.172, R.175, I.176
- Ligands: CHL.63, CLA.64, CHL.81, CLA.93, CLA.132
6 PLIP interactions:4 interactions with chain U, 2 interactions with chain G,- Hydrophobic interactions: U:I.176, G:W.80, G:T.82
- Salt bridges: U:R.175
- pi-Cation interactions: U:R.175
- Metal complexes: U:E.172
CHL.211: 18 residues within 4Å:- Chain 2: V.56, K.57, Y.58, L.59, P.61, F.62, Y.78, W.80, K.217, F.224
- Ligands: CLA.212, LHG.228, CHL.229, XAT.230, CHL.279
- Chain g: W.161, Q.164, G.169
7 PLIP interactions:7 interactions with chain 2,- Hydrophobic interactions: 2:V.56, 2:L.59, 2:F.62, 2:Y.78, 2:W.80, 2:W.80
- Metal complexes: 2:Y.58
CHL.215: 4 residues within 4Å:- Chain 2: S.151, L.152, V.153, Q.156
4 PLIP interactions:4 interactions with chain 2,- Hydrophobic interactions: 2:V.153, 2:Q.156
- Hydrogen bonds: 2:V.153
- Metal complexes: 2:V.153
CHL.216: 10 residues within 4Å:- Chain 2: W.105, A.134, L.144, Y.146, V.153, I.161, T.164
- Ligands: CLA.214, LUT.226, NEX.227
5 PLIP interactions:5 interactions with chain 2,- Hydrophobic interactions: 2:W.105, 2:L.144, 2:L.144, 2:I.161
- Hydrogen bonds: 2:Y.146
CHL.217: 14 residues within 4Å:- Chain 2: W.131, F.132, K.133, G.135, S.136, F.230
- Chain 9: F.263, V.264, P.265
- Ligands: CLA.213, CHL.219, LUT.226, XAT.233, CHL.234
6 PLIP interactions:4 interactions with chain 2, 2 interactions with chain 9,- Hydrophobic interactions: 2:W.131, 2:F.230, 9:F.263, 9:P.265
- Hydrogen bonds: 2:G.135
- Salt bridges: 2:K.133
CHL.218: 16 residues within 4Å:- Chain 2: R.104, L.108, V.172, Y.175, R.176, G.179, N.180, G.181, P.182, L.183, A.186, L.189, F.196
- Ligands: CLA.220, LUT.225, NEX.227
12 PLIP interactions:12 interactions with chain 2,- Hydrophobic interactions: 2:L.108, 2:V.172, 2:R.176, 2:P.182, 2:L.183, 2:A.186, 2:F.196, 2:F.196
- Hydrogen bonds: 2:L.183
- pi-Stacking: 2:F.196, 2:F.196, 2:F.196
CHL.219: 16 residues within 4Å:- Chain 2: L.98, H.102, W.105, Q.165, V.166, M.169, E.173, R.176
- Chain 9: W.80, T.82
- Ligands: CLA.213, CHL.217, XAT.233, CHL.234, CLA.235, CLA.274
9 PLIP interactions:8 interactions with chain 2, 1 interactions with chain 9,- Hydrophobic interactions: 2:W.105, 2:W.105, 2:V.166, 9:W.80
- Hydrogen bonds: 2:Q.165
- Salt bridges: 2:R.176
- pi-Cation interactions: 2:R.176, 2:R.176
- Metal complexes: 2:E.173
CHL.229: 20 residues within 4Å:- Chain 2: W.257, A.260, T.261, F.263, V.264
- Ligands: CHL.211, XAT.230, CLA.274, CHL.277, CHL.279
- Chain g: F.131, K.132, G.134, S.135, I.137, F.138, I.157, Q.164, F.228, I.232
11 PLIP interactions:3 interactions with chain 2, 8 interactions with chain g,- Hydrophobic interactions: 2:W.257, 2:A.260, 2:V.264, g:F.131, g:I.137, g:I.157, g:F.228, g:I.232
- Hydrogen bonds: g:G.134, g:S.135, g:Q.164
CHL.234: 14 residues within 4Å:- Chain 9: V.56, K.57, Y.58, L.59, G.60, F.62, Y.78, W.80
- Ligands: CLA.213, CHL.217, CHL.219, XAT.233, CLA.235, LHG.251
6 PLIP interactions:6 interactions with chain 9,- Hydrophobic interactions: 9:V.56, 9:L.59, 9:F.62, 9:Y.78, 9:W.80
- Metal complexes: 9:Y.58
CHL.238: 13 residues within 4Å:- Chain 9: S.151, L.152, V.153, H.154, Q.156, S.157, A.160, T.164
- Ligands: CLA.237, CHL.239
- Chain j: A.133, L.134, Y.137
11 PLIP interactions:6 interactions with chain 9, 5 interactions with chain j,- Hydrophobic interactions: 9:H.154, 9:Q.156, 9:T.164, j:A.133, j:L.134, j:Y.137, j:Y.137, j:Y.137
- Hydrogen bonds: 9:Q.156, 9:S.157
- Metal complexes: 9:V.153
CHL.239: 9 residues within 4Å:- Chain 9: W.105, L.144, I.161, T.164
- Ligands: CLA.237, CHL.238, CHL.240, LUT.249, NEX.250
3 PLIP interactions:3 interactions with chain 9,- Hydrophobic interactions: 9:W.105, 9:L.144, 9:I.161
CHL.240: 14 residues within 4Å:- Chain 9: W.131, F.132, K.133, G.135, S.136, Q.165, F.230
- Ligands: CHL.239, CHL.242, LUT.249, XAT.271, CHL.272
- Chain g: W.255, A.258
8 PLIP interactions:6 interactions with chain 9, 2 interactions with chain g,- Hydrophobic interactions: 9:W.131, 9:F.132, 9:F.230, g:W.255, g:W.255
- Hydrogen bonds: 9:G.135, 9:S.136, 9:Q.165
CHL.241: 18 residues within 4Å:- Chain 9: R.104, L.108, V.172, Y.175, R.176, G.179, N.180, G.181, P.182, L.183, E.185, A.186, P.192, F.196
- Ligands: CLA.237, CLA.243, LUT.248, NEX.250
15 PLIP interactions:15 interactions with chain 9,- Hydrophobic interactions: 9:L.108, 9:Y.175, 9:R.176, 9:P.182, 9:L.183, 9:A.186, 9:P.192, 9:F.196, 9:F.196
- Hydrogen bonds: 9:R.104
- Salt bridges: 9:R.104, 9:R.176
- pi-Cation interactions: 9:R.176, 9:R.176, 9:R.176
CHL.242: 16 residues within 4Å:- Chain 9: L.98, I.101, H.102, W.105, Q.165, M.169, E.173, F.227
- Ligands: CLA.213, CLA.235, CLA.236, CHL.240, XAT.271, CHL.272, CLA.273
- Chain g: W.79
7 PLIP interactions:7 interactions with chain 9,- Hydrophobic interactions: 9:I.101, 9:W.105, 9:W.105, 9:E.173, 9:F.227
- Hydrogen bonds: 9:Q.165
- Metal complexes: 9:E.173
CHL.256: 13 residues within 4Å:- Ligands: CLA.255, CHL.257, CLA.259, NEX.268
- Chain b: E.172, S.177, L.184, F.186, L.191, I.194, E.195, V.198, I.199
6 PLIP interactions:6 interactions with chain b,- Hydrophobic interactions: b:E.172, b:E.172, b:L.184, b:L.191, b:V.198, b:I.199
CHL.257: 9 residues within 4Å:- Ligands: CHL.256, XAT.267
- Chain b: W.165, Q.166, D.167, A.168, G.169, K.170, E.195
2 PLIP interactions:2 interactions with chain b,- Hydrogen bonds: b:G.169, b:K.170
CHL.258: 13 residues within 4Å:- Ligands: CLA.260, LUT.266, NEX.268
- Chain b: I.142, R.145, W.146, I.202, Q.205, R.206, R.215, P.218, F.222, F.223
10 PLIP interactions:10 interactions with chain b,- Hydrophobic interactions: b:Q.205, b:R.206, b:P.218, b:F.222, b:F.222, b:F.223
- Hydrogen bonds: b:R.145, b:R.206
- pi-Stacking: b:F.223
- pi-Cation interactions: b:R.206
CHL.264: 3 residues within 4Å:- Ligands: CLA.263, LUT.266
- Chain b: H.274
1 PLIP interactions:1 interactions with chain b,- Metal complexes: b:H.274
CHL.272: 14 residues within 4Å:- Ligands: CHL.240, CHL.242, XAT.271, CLA.273, LHG.288
- Chain g: P.55, K.56, Y.57, L.58, G.59, P.60, F.61, Y.77, W.79
7 PLIP interactions:7 interactions with chain g,- Hydrophobic interactions: g:P.55, g:L.58, g:F.61, g:Y.77, g:W.79, g:W.79
- Metal complexes: g:Y.57
CHL.276: 15 residues within 4Å:- Chain P: Y.179, Q.182, P.183, L.184
- Ligands: CHL.277
- Chain g: N.150, L.151, I.152, H.153, A.154, Q.155, S.156, A.159, I.160, V.163
12 PLIP interactions:2 interactions with chain P, 10 interactions with chain g,- Hydrophobic interactions: P:Q.182, P:L.184, g:I.152, g:I.152, g:A.154, g:I.160, g:V.163
- Hydrogen bonds: g:I.152, g:Q.155, g:S.156
- pi-Stacking: g:H.153
- Metal complexes: g:I.152
CHL.277: 12 residues within 4Å:- Ligands: CHL.229, CLA.275, CHL.276, LUT.286, NEX.287
- Chain g: W.104, G.134, L.143, I.152, V.163, Q.164, M.168
4 PLIP interactions:4 interactions with chain g,- Hydrophobic interactions: g:W.104, g:L.143, g:L.143, g:I.152
CHL.278: 18 residues within 4Å:- Ligands: CLA.280, LUT.285, NEX.287
- Chain g: R.103, W.104, L.107, I.171, Y.174, R.175, G.178, G.179, P.180, G.182, P.187, P.190, A.193, F.194, P.196
8 PLIP interactions:8 interactions with chain g,- Hydrophobic interactions: g:I.171, g:Y.174, g:R.175, g:P.190, g:F.194, g:F.194, g:P.196
- Hydrogen bonds: g:R.103
CHL.279: 19 residues within 4Å:- Chain 2: W.80, T.82
- Ligands: CHL.211, CLA.212, CHL.229, CLA.236, CLA.274
- Chain g: E.96, L.97, I.100, H.101, W.104, Q.164, V.165, M.168, G.169, E.172, R.175, F.228
9 PLIP interactions:7 interactions with chain g, 2 interactions with chain 2,- Hydrophobic interactions: g:W.104, g:V.165, g:E.172, g:F.228, 2:W.80, 2:T.82
- Salt bridges: g:R.175
- pi-Cation interactions: g:R.175
- Metal complexes: g:E.172
CHL.289: 8 residues within 4Å:- Ligands: CLA.49, CLA.290, LHG.305
- Chain i: I.69, F.70, P.72, Y.95, F.234
5 PLIP interactions:5 interactions with chain i,- Hydrophobic interactions: i:F.70, i:P.72, i:Y.95
- pi-Stacking: i:F.70
- Metal complexes: i:F.70
CHL.293: 11 residues within 4Å:- Ligands: CLA.292, CHL.294, CLA.296, NEX.304
- Chain i: W.120, L.154, I.169, A.174, A.177, E.178, L.182
6 PLIP interactions:6 interactions with chain i,- Hydrophobic interactions: i:W.120, i:L.154, i:L.154, i:I.169, i:A.174, i:L.182
CHL.294: 10 residues within 4Å:- Ligands: CHL.293, CLA.296, LUT.303
- Chain i: W.147, F.148, G.151, A.152, L.154, E.178, Y.244
3 PLIP interactions:3 interactions with chain i,- Hydrophobic interactions: i:W.147, i:F.148
- Hydrogen bonds: i:G.151
CHL.295: 13 residues within 4Å:- Ligands: CLA.297, LUT.302, NEX.304
- Chain i: R.119, W.120, Y.188, R.189, N.192, F.196, K.199, L.200, P.202, F.206
5 PLIP interactions:5 interactions with chain i,- Hydrophobic interactions: i:Y.188, i:F.196, i:P.202, i:F.206, i:F.206
CHL.306: 9 residues within 4Å:- Ligands: CLA.194, CLA.307, LHG.322
- Chain j: R.68, I.69, F.70, P.72, Y.93, Y.95
6 PLIP interactions:6 interactions with chain j,- Hydrophobic interactions: j:F.70, j:P.72, j:Y.93, j:Y.95
- pi-Stacking: j:F.70
- Metal complexes: j:F.70
CHL.310: 12 residues within 4Å:- Ligands: CLA.309, CHL.311, CLA.313, LUT.320, NEX.321
- Chain j: L.154, I.169, A.174, A.177, E.178, L.181, L.182
6 PLIP interactions:6 interactions with chain j,- Hydrophobic interactions: j:L.154, j:L.154, j:I.169, j:A.174, j:A.177, j:L.181
CHL.311: 10 residues within 4Å:- Ligands: CHL.310, CLA.313, LUT.320
- Chain j: W.147, F.148, G.151, A.152, L.155, E.178, Y.244
3 PLIP interactions:3 interactions with chain j,- Hydrophobic interactions: j:F.148, j:L.155
- Hydrogen bonds: j:G.151
CHL.312: 13 residues within 4Å:- Ligands: CLA.314, LUT.319, NEX.321
- Chain j: R.119, W.120, Y.188, R.189, N.192, F.196, K.199, L.200, P.202, F.206
8 PLIP interactions:8 interactions with chain j,- Hydrophobic interactions: j:Y.188, j:Y.188, j:R.189, j:L.200, j:P.202, j:F.206, j:F.206
- Hydrogen bonds: j:R.119
- 18 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
LUT.77: 18 residues within 4Å:- Chain G: M.107, L.111, V.114, D.197, L.199, G.200, L.201, N.218, L.221, S.225, F.229, Q.232, P.240, L.244
- Ligands: CHL.70, CLA.72, CLA.74, CLA.75
Ligand excluded by PLIPLUT.78: 17 residues within 4Å:- Chain G: W.80, D.81, T.82, H.102, W.105, A.106, G.109, W.131, M.223, M.226, F.227
- Ligands: CLA.64, CLA.65, CLA.66, CHL.68, CHL.69, CLA.132
Ligand excluded by PLIPLUT.105: 13 residues within 4Å:- Chain N: M.107, F.196, D.197, P.198, N.218, S.225, F.229, P.240, I.241
- Ligands: CHL.98, CLA.100, CLA.102, CLA.103
Ligand excluded by PLIPLUT.106: 18 residues within 4Å:- Chain N: W.80, D.81, T.82, H.102, W.105, L.108, G.109, G.112, C.113, M.223, M.226, F.227
- Ligands: CLA.65, CLA.92, CLA.93, CLA.94, CHL.96, CHL.97
Ligand excluded by PLIPLUT.123: 19 residues within 4Å:- Chain P: M.148, T.151, L.152, F.223, D.224, P.225, L.226, L.228, A.252, F.256, Q.259, P.267, N.270, W.271
- Ligands: CHL.115, CLA.117, CLA.119, CLA.120, CHL.121
Ligand excluded by PLIPLUT.143: 20 residues within 4Å:- Chain U: M.106, F.194, D.195, P.196, L.197, N.216, L.219, A.220, S.223, F.227, Q.230, P.238, I.239, L.242
- Ligands: LHG.53, CHL.136, CLA.138, CLA.140, CLA.141, CLA.142
Ligand excluded by PLIPLUT.144: 19 residues within 4Å:- Chain U: W.79, D.80, T.81, A.82, H.101, W.104, A.105, G.108, G.111, C.112, W.130, M.221, M.224, F.225
- Ligands: CLA.93, CLA.131, CLA.132, CLA.133, CHL.135
Ligand excluded by PLIPLUT.225: 19 residues within 4Å:- Chain 2: M.107, L.108, V.114, D.197, L.199, G.200, L.201, N.218, L.221, S.225, F.229, Q.232, P.240, I.241, L.244
- Ligands: CHL.218, CLA.220, CLA.222, CLA.223
Ligand excluded by PLIPLUT.226: 16 residues within 4Å:- Chain 2: W.80, D.81, T.82, H.102, W.105, G.109, G.112, W.131, M.223, M.226
- Ligands: CLA.212, CLA.213, CLA.214, CHL.216, CHL.217, CLA.274
Ligand excluded by PLIPLUT.248: 15 residues within 4Å:- Chain 9: M.107, V.114, F.196, D.197, P.198, L.199, N.218, S.225, F.229, P.240, I.241
- Ligands: CHL.241, CLA.243, CLA.245, CLA.246
Ligand excluded by PLIPLUT.249: 19 residues within 4Å:- Chain 9: W.80, D.81, T.82, H.102, W.105, A.106, G.109, G.112, C.113, A.134, M.223, M.226, F.227
- Ligands: CLA.213, CLA.235, CLA.236, CLA.237, CHL.239, CHL.240
Ligand excluded by PLIPLUT.266: 17 residues within 4Å:- Ligands: CHL.258, CLA.260, CLA.262, CLA.263, CHL.264
- Chain b: M.148, T.151, L.152, F.223, D.224, P.225, L.226, F.256, Q.259, P.267, N.270, W.271
Ligand excluded by PLIPLUT.285: 20 residues within 4Å:- Ligands: LHG.198, CHL.278, CLA.280, CLA.282, CLA.283, CLA.284
- Chain g: M.106, L.110, F.194, D.195, P.196, L.197, N.216, L.219, A.220, S.223, F.227, Q.230, P.238, L.242
Ligand excluded by PLIPLUT.286: 19 residues within 4Å:- Ligands: CLA.236, CLA.273, CLA.274, CLA.275, CHL.277
- Chain g: D.80, T.81, A.82, H.101, W.104, A.105, G.108, G.111, C.112, W.130, A.133, M.221, M.224, F.225
Ligand excluded by PLIPLUT.302: 18 residues within 4Å:- Ligands: CHL.295, CLA.297, CLA.299, CLA.300, CLA.301, LHG.305
- Chain i: M.122, A.126, I.129, P.208, L.211, N.228, A.235, F.239, Q.242, P.250, N.253, L.254
Ligand excluded by PLIPLUT.303: 16 residues within 4Å:- Ligands: CLA.290, CLA.291, CLA.292, CHL.294
- Chain i: Y.95, P.97, F.98, H.117, W.120, G.124, G.127, F.128, W.147, T.150, M.233, M.236
Ligand excluded by PLIPLUT.319: 19 residues within 4Å:- Ligands: CHL.312, CLA.314, CLA.316, CLA.317, CLA.318, LHG.322
- Chain j: M.122, A.126, I.129, P.208, L.211, N.228, L.231, A.235, F.239, Q.242, P.250, N.253, L.254
Ligand excluded by PLIPLUT.320: 19 residues within 4Å:- Ligands: CLA.307, CLA.308, CLA.309, CHL.310, CHL.311
- Chain j: Y.95, P.97, F.98, L.100, H.117, W.120, A.121, G.124, G.127, F.128, W.147, T.150, M.233, M.236
Ligand excluded by PLIP- 10 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
NEX.79: 8 residues within 4Å:- Chain G: Y.146, L.168, A.171, V.172, Y.175
- Ligands: CLA.66, CHL.68, CHL.70
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:L.168, G:A.171
NEX.107: 8 residues within 4Å:- Chain N: Y.146, L.168, V.172, Y.175
- Ligands: CLA.94, CHL.96, CHL.98, CLA.299
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:L.168, N:Y.175
NEX.125: 9 residues within 4Å:- Chain P: W.146, L.149, Y.179, V.198, Y.201
- Ligands: CLA.112, CHL.113, CHL.115
- Chain g: P.196
3 PLIP interactions:3 interactions with chain P- Hydrophobic interactions: P:W.146, P:L.149, P:Y.201
NEX.145: 9 residues within 4Å:- Chain U: W.104, Y.145, L.167, I.171, Y.174
- Ligands: CLA.133, CHL.135, CHL.136
- Chain b: P.225
4 PLIP interactions:3 interactions with chain U, 1 interactions with chain b- Hydrophobic interactions: U:W.104, U:L.167, U:I.171
- Hydrogen bonds: b:P.225
NEX.227: 6 residues within 4Å:- Chain 2: L.168, V.172, Y.175
- Ligands: CLA.214, CHL.216, CHL.218
1 PLIP interactions:1 interactions with chain 2- Hydrophobic interactions: 2:L.168
NEX.250: 9 residues within 4Å:- Chain 9: Y.146, L.168, A.171, V.172, Y.175
- Ligands: CLA.237, CHL.239, CHL.241, CLA.316
2 PLIP interactions:2 interactions with chain 9- Hydrophobic interactions: 9:L.168, 9:A.171
NEX.268: 9 residues within 4Å:- Chain U: P.196
- Ligands: CLA.255, CHL.256, CHL.258
- Chain b: W.146, L.149, Y.179, Y.201, I.202
5 PLIP interactions:1 interactions with chain U, 4 interactions with chain b- Hydrophobic interactions: U:P.196, b:W.146, b:L.149, b:Y.201, b:I.202
NEX.287: 8 residues within 4Å:- Chain P: P.225
- Ligands: CLA.275, CHL.277, CHL.278
- Chain g: Y.145, L.167, I.171, Y.174
3 PLIP interactions:2 interactions with chain g, 1 interactions with chain P- Hydrophobic interactions: g:L.167, g:I.171
- Hydrogen bonds: P:P.225
NEX.304: 8 residues within 4Å:- Ligands: CLA.292, CHL.293, CHL.295
- Chain i: L.123, Y.162, L.181, Y.188, L.194
7 PLIP interactions:7 interactions with chain i- Hydrophobic interactions: i:L.123, i:L.181, i:L.181, i:L.194
- Hydrogen bonds: i:Y.162, i:Y.162, i:Y.188
NEX.321: 8 residues within 4Å:- Ligands: CLA.309, CHL.310, CHL.312
- Chain j: W.120, Y.162, L.181, Y.188, L.194
7 PLIP interactions:7 interactions with chain j- Hydrophobic interactions: j:W.120, j:L.181, j:Y.188, j:L.194
- Hydrogen bonds: j:Y.162, j:Y.162, j:Y.188
- 8 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
XAT.82: 12 residues within 4Å:- Chain G: A.256, W.257, F.259, A.260, F.263
- Chain U: W.161, V.165
- Ligands: CHL.63, CLA.73, CLA.75, LHG.80, CHL.81
7 PLIP interactions:5 interactions with chain G, 2 interactions with chain U- Hydrophobic interactions: G:A.256, G:W.257, G:W.257, G:W.257, G:A.260, U:W.161, U:V.165
XAT.90: 10 residues within 4Å:- Chain G: W.162
- Chain N: W.257, A.260, F.263
- Ligands: CHL.69, CHL.71, CHL.91, CLA.101, CLA.103, LHG.108
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:W.257
- Hydrogen bonds: N:F.263
XAT.124: 16 residues within 4Å:- Chain P: F.78, D.79, P.80, F.81, L.83, H.143, A.150, W.165, A.168, M.250, F.253, L.254
- Ligands: CLA.110, CLA.111, CLA.112, CHL.114
12 PLIP interactions:12 interactions with chain P- Hydrophobic interactions: P:F.78, P:F.78, P:F.81, P:A.150, P:W.165, P:M.250, P:F.253, P:F.253, P:F.253, P:L.254
- Hydrogen bonds: P:F.81, P:L.83
XAT.129: 12 residues within 4Å:- Chain N: W.162
- Chain U: A.254, W.255, Y.257, A.258, F.261
- Ligands: CHL.97, CHL.99, CHL.130, CLA.139, CLA.141, LHG.146
2 PLIP interactions:2 interactions with chain U- Hydrophobic interactions: U:A.254, U:W.255
XAT.230: 12 residues within 4Å:- Chain 2: A.256, W.257, F.259, A.260, F.263
- Ligands: CHL.211, CLA.221, CLA.223, LHG.228, CHL.229
- Chain g: W.161, V.165
7 PLIP interactions:5 interactions with chain 2, 2 interactions with chain g- Hydrophobic interactions: 2:A.256, 2:W.257, 2:W.257, 2:W.257, 2:A.260, g:W.161, g:V.165
XAT.233: 10 residues within 4Å:- Chain 2: W.162
- Chain 9: W.257, A.260, F.263
- Ligands: CHL.217, CHL.219, CHL.234, CLA.244, CLA.246, LHG.251
4 PLIP interactions:3 interactions with chain 9, 1 interactions with chain 2- Hydrophobic interactions: 9:W.257, 9:W.257, 2:W.162
- Hydrogen bonds: 9:F.263
XAT.267: 17 residues within 4Å:- Ligands: CLA.253, CLA.254, CLA.255, CHL.257
- Chain b: F.78, D.79, P.80, F.81, L.83, H.143, A.147, A.150, W.165, A.168, M.250, F.253, L.254
9 PLIP interactions:9 interactions with chain b- Hydrophobic interactions: b:A.147, b:A.150, b:M.250, b:F.253, b:F.253, b:F.253, b:L.254
- Hydrogen bonds: b:F.81, b:L.83
XAT.271: 13 residues within 4Å:- Chain 9: W.162
- Ligands: CHL.240, CHL.242, CHL.272, CLA.281, CLA.283, CLA.284, LHG.288
- Chain g: A.254, W.255, Y.257, A.258, F.261
3 PLIP interactions:1 interactions with chain 9, 2 interactions with chain g- Hydrophobic interactions: 9:W.162, g:A.254, g:W.255
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caferri, R. et al., A stress-induced paralog of Lhcb4 controls the photosystem II functional architecture in Arabidopsis thaliana. To Be Published
- Release Date
- 2025-06-18
- Peptides
- Photosystem II protein D1: AW
Photosystem II CP47 reaction center protein: BX
Photosystem II CP43 reaction center protein: CY
Photosystem II D2 protein: DZ
Cytochrome b559 subunit alpha: E0
Cytochrome b559 subunit beta: F1
Chlorophyll a-b binding protein 2, chloroplastic: GN29
Photosystem II reaction center protein H: H3
Photosystem II reaction center protein I: I4
Photosystem II reaction center protein J: J5
Photosystem II reaction center protein K: K6
Photosystem II reaction center protein L: L7
Photosystem II reaction center protein M: M8
Oxygen-evolving enhancer protein 1-1, chloroplastic: Oa
Chlorophyll a-b binding protein CP29.1, chloroplastic: Pb
Photosystem II reaction center protein T: Qc
Photosystem II 5 kDa protein, chloroplastic: Rd
Photosystem II reaction center W protein, chloroplastic: Se
(thale cress) hypothetical protein: Tf
Chlorophyll a-b binding protein 2.2, chloroplastic: Ug
Photosystem II reaction center protein Z: Vh
Chlorophyll a-b binding protein CP26, chloroplastic: ij - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AW
aB
BX
bC
CY
cD
DZ
dE
E0
eF
F1
fG
GN
N2
g9
nH
H3
hI
I4
iJ
J5
jK
K6
kL
L7
lM
M8
mO
Oa
oP
Rb
rQ
Tc
tR
Ud
uS
We
wT
Xf
xU
Yg
yV
Zh
zi
Sj
s - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.10 Å
- Oligo State
- hetero-2-2-2-2-2-2-4-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 156 x CLA: CHLOROPHYLL A(Non-covalent)
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
- 20 x BCR: BETA-CAROTENE(Non-covalent)
- 6 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
- 8 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
- 6 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
- 26 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 52 x CHL: CHLOROPHYLL B(Non-covalent)
- 18 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
- 10 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
- 8 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caferri, R. et al., A stress-induced paralog of Lhcb4 controls the photosystem II functional architecture in Arabidopsis thaliana. To Be Published
- Release Date
- 2025-06-18
- Peptides
- Photosystem II protein D1: AW
Photosystem II CP47 reaction center protein: BX
Photosystem II CP43 reaction center protein: CY
Photosystem II D2 protein: DZ
Cytochrome b559 subunit alpha: E0
Cytochrome b559 subunit beta: F1
Chlorophyll a-b binding protein 2, chloroplastic: GN29
Photosystem II reaction center protein H: H3
Photosystem II reaction center protein I: I4
Photosystem II reaction center protein J: J5
Photosystem II reaction center protein K: K6
Photosystem II reaction center protein L: L7
Photosystem II reaction center protein M: M8
Oxygen-evolving enhancer protein 1-1, chloroplastic: Oa
Chlorophyll a-b binding protein CP29.1, chloroplastic: Pb
Photosystem II reaction center protein T: Qc
Photosystem II 5 kDa protein, chloroplastic: Rd
Photosystem II reaction center W protein, chloroplastic: Se
(thale cress) hypothetical protein: Tf
Chlorophyll a-b binding protein 2.2, chloroplastic: Ug
Photosystem II reaction center protein Z: Vh
Chlorophyll a-b binding protein CP26, chloroplastic: ij - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AW
aB
BX
bC
CY
cD
DZ
dE
E0
eF
F1
fG
GN
N2
g9
nH
H3
hI
I4
iJ
J5
jK
K6
kL
L7
lM
M8
mO
Oa
oP
Rb
rQ
Tc
tR
Ud
uS
We
wT
Xf
xU
Yg
yV
Zh
zi
Sj
s - Membrane
-
We predict this structure to be a membrane protein.