- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.00 Å
- Oligo State
- hetero-2-2-2-2-2-2-4-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 154 x CLA: CHLOROPHYLL A(Non-covalent)
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.3: 27 residues within 4Å:- Chain A: L.41, A.44, T.45, F.48, F.119, V.123, Y.126, E.130, A.146, Y.147, P.150, L.174, G.175, T.179, P.279, V.280, I.283
- Chain D: L.206, A.209, L.210, A.213, I.214, W.254, F.258
- Ligands: CLA.1, CLA.60, LHG.66
14 PLIP interactions:12 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:L.41, A:L.41, A:A.44, A:F.48, A:F.119, A:Y.147, A:Y.147, A:P.150, A:P.279, A:I.283, D:L.206, D:A.213
- Hydrogen bonds: A:Y.126, A:E.130
PHO.61: 27 residues within 4Å:- Chain A: F.206, S.209, L.210, M.214, L.258
- Chain D: A.42, A.45, L.46, W.49, V.115, G.119, A.122, L.123, F.126, Q.130, N.143, A.146, F.147, P.150, F.174, G.175, V.176, I.179, P.276, L.280
- Ligands: CLA.2, CLA.62
24 PLIP interactions:23 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:A.42, D:A.45, D:L.46, D:W.49, D:W.49, D:V.115, D:A.122, D:L.123, D:F.126, D:F.126, D:A.146, D:F.147, D:F.147, D:P.150, D:F.174, D:F.174, D:F.174, D:V.176, D:I.179, D:P.276, D:L.280, A:F.206
- Hydrogen bonds: D:Q.130, D:N.143
PHO.156: 27 residues within 4Å:- Chain W: L.41, A.44, T.45, F.48, F.119, V.123, Y.126, E.130, A.146, Y.147, P.150, L.174, G.175, T.179, P.279, V.280, I.283
- Chain Z: L.206, A.209, L.210, A.213, I.214, W.254, F.258
- Ligands: CLA.155, CLA.212, LHG.218
16 PLIP interactions:14 interactions with chain W, 2 interactions with chain Z- Hydrophobic interactions: W:L.41, W:L.41, W:A.44, W:F.48, W:F.119, W:Y.147, W:Y.147, W:P.150, W:L.174, W:L.174, W:P.279, W:I.283, Z:L.206, Z:A.213
- Hydrogen bonds: W:Y.126, W:E.130
PHO.157: 27 residues within 4Å:- Chain W: F.206, S.209, L.210, A.213, M.214, I.259
- Chain Z: A.42, L.46, W.49, V.115, G.119, A.122, L.123, F.126, Q.130, N.143, A.146, F.147, P.150, F.174, G.175, V.176, I.179, P.276, L.280
- Ligands: CLA.213, CLA.214
23 PLIP interactions:21 interactions with chain Z, 2 interactions with chain W- Hydrophobic interactions: Z:A.42, Z:L.46, Z:W.49, Z:W.49, Z:V.115, Z:A.122, Z:L.123, Z:F.126, Z:F.126, Z:A.146, Z:F.147, Z:F.147, Z:P.150, Z:F.174, Z:F.174, Z:F.174, Z:V.176, Z:I.179, Z:P.276, W:F.206, W:A.213
- Hydrogen bonds: Z:Q.130, Z:N.143
- 20 x BCR: BETA-CAROTENE(Non-covalent)
BCR.5: 16 residues within 4Å:- Chain A: I.38, P.39, L.42, T.43, S.46, V.47, I.50, A.51, A.54, V.102, L.106
- Chain I: F.15
- Ligands: CLA.4, DGD.8, LMG.164, SQD.165
Ligand excluded by PLIPBCR.26: 14 residues within 4Å:- Chain B: M.25, L.29, I.112, W.115
- Chain M: L.6, I.9, L.13
- Ligands: CLA.16, CLA.22, CLA.23, BCR.27, LMG.29, LHG.247
- Chain c: F.19
Ligand excluded by PLIPBCR.27: 14 residues within 4Å:- Chain B: L.29, G.32, W.33, S.36, I.101, S.104, G.105, L.109
- Ligands: CLA.16, CLA.22, BCR.26, LMG.29, DGD.33, LHG.247
Ligand excluded by PLIPBCR.28: 13 residues within 4Å:- Chain B: F.103, L.106, L.109, A.110, I.112, W.113, V.116
- Ligands: CLA.15, CLA.24, CLA.25, LHG.30, SQD.34
- Chain c: F.22
Ligand excluded by PLIPBCR.51: 17 residues within 4Å:- Chain C: F.112, V.116, L.117, I.120, S.121, V.124
- Chain K: Y.30
- Chain P: L.267
- Chain V: V.51, V.54, G.55, N.58
- Ligands: CLA.49, CLA.50, BCR.55, SQD.57, DMU.132
Ligand excluded by PLIPBCR.52: 15 residues within 4Å:- Chain C: I.209, L.213, I.224, G.236, H.237, L.240, A.263, L.264
- Chain I: F.23, L.24
- Ligands: CLA.38, CLA.42, CLA.43, CLA.44, LHG.133
Ligand excluded by PLIPBCR.55: 22 residues within 4Å:- Chain C: A.55, G.58, L.59, F.62, F.112, V.116, L.119, I.120, S.122, A.123, G.126, I.130
- Chain K: Y.30, L.33, F.47, A.51, W.54
- Chain V: L.12, S.16
- Ligands: CLA.48, BCR.51, BCR.92
Ligand excluded by PLIPBCR.64: 11 residues within 4Å:- Chain D: Y.43, F.44, G.47, F.50, L.111, F.114
- Chain F: P.23, T.24, F.27
- Chain J: I.25
- Ligands: LMG.68
Ligand excluded by PLIPBCR.91: 18 residues within 4Å:- Chain B: V.187, L.208
- Chain H: M.43, A.46, M.47, L.49, F.50, V.52, F.53, I.56
- Chain T: G.78, I.79, L.83
- Ligands: CLA.10, CLA.11, CLA.12, CLA.18, CLA.19
Ligand excluded by PLIPBCR.92: 16 residues within 4Å:- Chain C: F.62
- Chain J: G.14, T.15, I.22
- Chain K: M.40, I.43, F.46, L.49, L.50, F.52, V.53
- Chain V: I.13, S.16, S.17, L.20
- Ligands: BCR.55
Ligand excluded by PLIPBCR.159: 16 residues within 4Å:- Chain 4: F.15
- Chain W: I.38, P.39, L.42, T.43, S.46, V.47, I.50, A.51, A.54, V.102, L.106
- Ligands: LMG.32, DGD.33, SQD.34, CLA.158
Ligand excluded by PLIPBCR.182: 14 residues within 4Å:- Chain 8: L.6, I.9, L.13
- Chain Q: F.19
- Chain X: M.25, L.29, I.112, W.115
- Ligands: LHG.94, CLA.172, CLA.178, CLA.179, BCR.183, LMG.185
Ligand excluded by PLIPBCR.183: 14 residues within 4Å:- Chain X: L.29, G.32, W.33, S.36, I.101, S.104, G.105, L.109
- Ligands: LHG.94, CLA.169, CLA.172, CLA.178, BCR.182, LMG.185
Ligand excluded by PLIPBCR.184: 13 residues within 4Å:- Chain Q: F.22
- Chain X: F.103, L.106, L.109, A.110, I.112, W.113, V.116
- Ligands: SQD.165, CLA.171, CLA.180, CLA.181, LHG.186
Ligand excluded by PLIPBCR.203: 14 residues within 4Å:- Chain 4: F.23
- Chain Y: I.209, L.213, I.224, D.232, G.236, H.237, L.240, L.264
- Ligands: CLA.190, CLA.194, CLA.195, CLA.196, LHG.205
Ligand excluded by PLIPBCR.207: 19 residues within 4Å:- Chain 6: Y.30, F.47
- Chain Y: A.55, G.58, L.59, F.62, L.69, V.116, L.119, I.120, S.122, A.123, G.126, I.130
- Ligands: CLA.200, BCR.244, BCR.285
- Chain g: L.12, S.16
Ligand excluded by PLIPBCR.216: 12 residues within 4Å:- Chain 1: P.23, T.24, F.27
- Chain 5: V.21, I.25
- Chain Z: Y.43, F.44, G.47, F.50, L.111, F.114
- Ligands: LMG.220
Ligand excluded by PLIPBCR.243: 16 residues within 4Å:- Chain 3: M.43, A.46, M.47, L.49, F.50, V.52, F.53, I.56
- Ligands: CLA.166, CLA.167, CLA.168, CLA.174, CLA.175
- Chain f: G.78, I.79, L.83
Ligand excluded by PLIPBCR.244: 16 residues within 4Å:- Chain 5: G.14, T.15, I.22
- Chain 6: M.40, I.43, F.46, L.49, L.50, F.52, V.53
- Chain Y: F.62
- Ligands: BCR.207
- Chain g: I.13, S.16, S.17, L.20
Ligand excluded by PLIPBCR.285: 17 residues within 4Å:- Chain 6: Y.30
- Chain Y: F.112, V.116, L.117, I.120, S.121, V.124
- Ligands: CLA.201, CLA.202, BCR.207, SQD.209, DMU.281
- Chain b: L.267
- Chain g: V.51, V.54, G.55, N.58
Ligand excluded by PLIP- 8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.6: 19 residues within 4Å:- Chain A: L.200, F.265, N.267, S.270, F.273, F.274, A.277, W.278, V.281, G.282
- Chain C: Q.28, A.34, W.36
- Chain D: N.231, F.233, R.234
- Chain K: L.49, F.52
- Ligands: LHG.67
14 PLIP interactions:10 interactions with chain A, 2 interactions with chain K, 2 interactions with chain D- Hydrophobic interactions: A:L.200, A:F.265, A:F.274, A:F.274, A:W.278, A:W.278, A:W.278, K:L.49, K:F.52
- Hydrogen bonds: A:N.267, A:S.270, A:S.270, D:N.231, D:R.234
SQD.34: 16 residues within 4Å:- Chain B: L.109, W.113, Y.117
- Chain H: R.15
- Chain W: N.26, R.27, L.28, I.30, I.38, L.42
- Ligands: CLA.15, CLA.25, BCR.28, DGD.33, BCR.159
- Chain c: F.22
11 PLIP interactions:7 interactions with chain W, 3 interactions with chain B, 1 interactions with chain H- Hydrophobic interactions: W:N.26, W:L.28, W:I.30, W:I.38, W:I.38, B:L.109
- Hydrogen bonds: W:N.26, W:R.27, B:Y.117, B:Y.117
- Salt bridges: H:R.15
SQD.57: 11 residues within 4Å:- Chain C: S.143, F.144, P.145, F.146, F.147
- Ligands: CLA.49, CLA.50, BCR.51, CHL.115, CLA.124, LHG.131
4 PLIP interactions:2 interactions with chain P, 2 interactions with chain C- Salt bridges: P:R.68, P:R.68
- Hydrogen bonds: C:S.143, C:F.146
SQD.95: 12 residues within 4Å:- Chain 8: I.15, L.16, T.19, L.23, Y.26, V.30
- Chain L: E.8
- Chain M: V.17, F.21, I.24
- Ligands: CLA.23, LHG.247
10 PLIP interactions:4 interactions with chain 8, 1 interactions with chain 7, 1 interactions with chain L, 4 interactions with chain M- Hydrophobic interactions: 8:I.15, 8:L.23, 8:Y.26, 8:V.30, M:V.17, M:F.21, M:F.21, M:I.24
- Salt bridges: 7:R.15
- Hydrogen bonds: L:E.8
SQD.160: 18 residues within 4Å:- Chain 6: L.49
- Chain W: L.200, G.204, F.265, N.267, S.270, F.273, F.274, A.277, W.278, V.281
- Chain Y: Q.28, A.34, W.36
- Chain Z: N.231, F.233, R.234
- Ligands: LHG.219
12 PLIP interactions:1 interactions with chain 6, 2 interactions with chain Z, 8 interactions with chain W, 1 interactions with chain Y- Hydrophobic interactions: 6:L.49, W:F.265, W:F.274, W:F.274, W:A.277, W:W.278, Y:W.36
- Hydrogen bonds: Z:N.231, Z:R.234, W:N.267, W:S.270, W:S.270
SQD.165: 16 residues within 4Å:- Chain 3: R.15
- Chain A: N.26, R.27, L.28, I.30, I.38, L.42
- Chain Q: F.22
- Chain X: L.109, W.113, Y.117
- Ligands: BCR.5, DGD.8, CLA.171, CLA.181, BCR.184
10 PLIP interactions:7 interactions with chain A, 1 interactions with chain 3, 2 interactions with chain X- Hydrophobic interactions: A:N.26, A:L.28, A:I.30, A:I.38, A:L.42, X:L.109
- Hydrogen bonds: A:N.26, A:R.27, X:Y.117
- Salt bridges: 3:R.15
SQD.209: 9 residues within 4Å:- Chain Y: S.143, P.145, F.146
- Ligands: CLA.201, CLA.202, CHL.264, CLA.273, LHG.280, BCR.285
3 PLIP interactions:1 interactions with chain b, 2 interactions with chain Y- Salt bridges: b:R.68
- Hydrogen bonds: Y:S.143, Y:F.146
SQD.245: 13 residues within 4Å:- Chain 7: E.8
- Chain 8: F.21, I.24, K.28
- Chain L: R.15
- Chain M: I.15, L.16, T.19, L.23, Y.26, V.30
- Ligands: LHG.94, CLA.179
11 PLIP interactions:4 interactions with chain M, 2 interactions with chain 7, 4 interactions with chain 8, 1 interactions with chain L- Hydrophobic interactions: M:I.15, M:L.23, M:Y.26, M:V.30, 8:F.21, 8:F.21, 8:I.24, 8:I.24
- Hydrogen bonds: 7:E.8, 7:E.8
- Salt bridges: L:R.15
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.7: 8 residues within 4Å:- Chain A: H.215, Y.246, H.272
- Chain D: H.215, Y.245, K.265, H.269
- Ligands: FE2.9
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:Y.246, D:Y.245, D:K.265
BCT.162: 8 residues within 4Å:- Chain W: H.215, Y.246, H.272
- Chain Z: H.215, Y.245, K.265, H.269
- Ligands: FE2.163
3 PLIP interactions:2 interactions with chain Z, 1 interactions with chain W- Hydrogen bonds: Z:Y.245, Z:K.265, W:Y.246
- 8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.8: 13 residues within 4Å:- Chain A: I.50, V.102, D.103
- Chain O: K.162, G.206
- Chain X: W.75, P.88, G.89, L.90
- Ligands: BCR.5, LMG.164, SQD.165, CLA.171
6 PLIP interactions:2 interactions with chain A, 2 interactions with chain O, 2 interactions with chain X- Hydrophobic interactions: A:I.50, X:L.90, X:L.90
- Hydrogen bonds: A:D.103, O:K.162, O:K.162
DGD.33: 13 residues within 4Å:- Chain 9: K.162
- Chain B: W.75, N.87, P.88, L.90, V.102, L.106
- Chain W: D.103
- Ligands: CLA.15, BCR.27, LMG.32, SQD.34, BCR.159
8 PLIP interactions:1 interactions with chain W, 6 interactions with chain B, 1 interactions with chain 9- Hydrogen bonds: W:D.103, B:E.94, 9:K.162
- Hydrophobic interactions: B:W.75, B:L.90, B:V.102, B:V.102, B:L.106
DGD.35: 8 residues within 4Å:- Chain B: W.185, I.203, A.204, L.208
- Ligands: CLA.10, LHG.36, CHL.328
- Chain j: A.261
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain j- Hydrophobic interactions: B:W.185, B:W.185, B:I.203, B:L.208, j:A.261
DGD.53: 28 residues within 4Å:- Chain A: L.91, L.117, L.121, A.152, L.159, I.163
- Chain C: P.217, F.218, G.219, G.220, G.222, W.223, V.225, S.226, V.227, D.228, F.284, C.288, F.292, N.293, N.294, T.295, D.360, L.361, R.362, F.435, F.438
- Ligands: LMG.37
21 PLIP interactions:16 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:F.218, C:W.223, C:V.225, C:F.284, C:F.284, C:F.435, C:F.435, C:F.438, A:L.117, A:L.121, A:A.152, A:L.159, A:I.163
- Hydrogen bonds: C:F.218, C:G.220, C:G.220, C:N.294, C:T.295, C:D.360, C:R.362, C:R.362
DGD.69: 21 residues within 4Å:- Chain B: F.193, F.250, G.254, Y.258, Q.274, Q.277, T.452, F.463
- Chain D: A.87, H.88, L.117, F.121, I.124, I.160, L.163
- Chain H: L.58, Y.61, N.62, V.72
- Ligands: CLA.11, CLA.17
15 PLIP interactions:6 interactions with chain B, 6 interactions with chain D, 3 interactions with chain H- Hydrophobic interactions: B:F.250, B:Y.258, B:T.452, B:F.463, B:F.463, D:L.117, D:F.121, D:I.160, H:Y.61, H:Y.61
- Hydrogen bonds: B:Q.277, D:H.88, D:H.88, H:N.62
- Salt bridges: D:H.88
DGD.188: 8 residues within 4Å:- Chain X: W.185, I.203, A.204, L.208
- Ligands: CLA.166, LHG.189, CHL.253
- Chain a: A.261
4 PLIP interactions:3 interactions with chain X, 1 interactions with chain a- Hydrophobic interactions: X:W.185, X:I.203, X:L.208, a:A.261
DGD.204: 28 residues within 4Å:- Chain W: L.91, L.117, L.121, A.152, L.159, I.163
- Chain Y: P.217, F.218, G.219, G.220, G.222, W.223, V.225, S.226, V.227, D.228, F.284, C.288, F.292, N.293, N.294, T.295, D.360, L.361, R.362, F.435, F.438
- Ligands: LMG.161
20 PLIP interactions:15 interactions with chain Y, 5 interactions with chain W- Hydrophobic interactions: Y:F.218, Y:V.225, Y:F.284, Y:F.284, Y:F.435, Y:F.435, Y:F.438, W:L.117, W:L.121, W:A.152, W:L.159, W:I.163
- Hydrogen bonds: Y:F.218, Y:G.220, Y:G.220, Y:N.294, Y:T.295, Y:D.360, Y:R.362, Y:R.362
DGD.221: 24 residues within 4Å:- Chain 3: L.58, Y.61, N.62, V.72
- Chain X: F.193, F.250, G.254, Y.258, Q.274, Q.277, T.452, A.456, F.463
- Chain Z: A.87, H.88, L.117, F.121, I.124, I.160, L.163, L.292
- Ligands: CLA.167, CLA.173
- Chain d: K.99
12 PLIP interactions:6 interactions with chain Z, 6 interactions with chain X- Hydrophobic interactions: Z:L.117, Z:F.121, Z:I.160, Z:L.163, X:T.452, X:A.456, X:F.463, X:F.463
- Hydrogen bonds: Z:H.88, Z:H.88, X:Q.274, X:Q.277
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.9: 5 residues within 4Å:- Chain A: H.215, H.272
- Chain D: H.215, H.269
- Ligands: BCT.7
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Metal complexes: A:H.215, A:H.272, D:H.215, D:H.269
FE2.163: 5 residues within 4Å:- Chain W: H.215, H.272
- Chain Z: H.215, H.269
- Ligands: BCT.162
4 PLIP interactions:2 interactions with chain W, 2 interactions with chain Z- Metal complexes: W:H.215, W:H.272, Z:H.215, Z:H.269
- 14 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.29: 19 residues within 4Å:- Chain B: Y.40, A.327, G.328, N.332, W.450, F.453, F.458
- Chain D: L.285
- Chain L: F.36
- Chain M: N.4, A.10, L.13, F.14
- Ligands: CLA.16, CLA.22, CLA.23, BCR.26, BCR.27, LHG.93
12 PLIP interactions:3 interactions with chain M, 5 interactions with chain B, 1 interactions with chain D, 3 interactions with chain L- Hydrophobic interactions: M:L.13, M:F.14, B:W.450, B:F.453, B:F.458, D:L.285, L:F.36, L:F.36, L:F.36
- Hydrogen bonds: M:N.4, B:Y.40, B:N.332
LMG.32: 7 residues within 4Å:- Chain 4: M.1, L.4
- Chain B: N.87
- Chain W: S.101, V.102
- Ligands: DGD.33, BCR.159
4 PLIP interactions:1 interactions with chain W, 1 interactions with chain 4, 2 interactions with chain B- Hydrogen bonds: W:V.102, B:N.87, B:N.87
- Hydrophobic interactions: 4:L.4
LMG.37: 21 residues within 4Å:- Chain A: F.93, W.97, E.98
- Chain C: L.214, K.215, S.216, P.217, F.218, E.221, W.223
- Chain I: K.5, Y.9, V.16
- Chain S: T.87, G.91, L.92, F.94, G.95
- Ligands: CLA.4, CLA.42, DGD.53
13 PLIP interactions:5 interactions with chain S, 1 interactions with chain A, 3 interactions with chain C, 4 interactions with chain I- Hydrophobic interactions: S:F.94, C:P.217, C:W.223, C:W.223, I:V.16
- Hydrogen bonds: S:G.91, S:L.92, S:L.92, S:F.94, A:W.97, I:K.5, I:K.5, I:Y.9
LMG.58: 6 residues within 4Å:- Chain C: F.173, F.177, L.180, T.200, L.202
- Ligands: DMU.59
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.173, C:F.177, C:F.177, C:L.180
LMG.68: 13 residues within 4Å:- Chain D: Y.68, G.71, C.72, N.73, F.74
- Chain F: Q.35, R.39
- Chain J: F.28, G.31, S.32
- Ligands: CLA.2, CLA.62, BCR.64
10 PLIP interactions:3 interactions with chain F, 2 interactions with chain J, 5 interactions with chain D- Hydrogen bonds: F:M.34, F:Q.35, F:R.39, J:G.31, J:S.32, D:Y.68, D:F.74
- Hydrophobic interactions: D:F.74, D:F.74, D:F.74
LMG.114: 2 residues within 4Å:- Chain P: Y.137
- Ligands: CHL.100
No protein-ligand interaction detected (PLIP)LMG.135: 13 residues within 4Å:- Chain S: L.92, L.96, S.97, N.98, N.99, W.103, L.105, F.106, F.109
- Chain U: F.114
- Ligands: LHG.133, VTQ.134, CLA.147
8 PLIP interactions:1 interactions with chain U, 7 interactions with chain S- Hydrophobic interactions: U:F.114, S:L.96, S:L.105, S:F.106, S:F.109, S:F.109, S:F.109
- Hydrogen bonds: S:N.99
LMG.161: 22 residues within 4Å:- Chain 4: K.5, Y.9, V.16
- Chain W: F.93, W.97, E.98, L.121
- Chain Y: L.214, K.215, S.216, P.217, F.218, E.221, W.223
- Ligands: CLA.158, CLA.194, DGD.204
- Chain e: T.87, G.91, L.92, F.94, G.95
15 PLIP interactions:2 interactions with chain W, 3 interactions with chain Y, 6 interactions with chain e, 4 interactions with chain 4- Hydrophobic interactions: W:L.121, Y:P.217, Y:W.223, Y:W.223, e:F.94, 4:V.16
- Hydrogen bonds: W:W.97, e:T.87, e:G.91, e:L.92, e:L.92, e:F.94, 4:K.5, 4:K.5, 4:Y.9
LMG.164: 7 residues within 4Å:- Chain A: S.101, V.102
- Chain I: M.1, L.4
- Chain X: N.87
- Ligands: BCR.5, DGD.8
5 PLIP interactions:2 interactions with chain X, 1 interactions with chain I, 2 interactions with chain A- Hydrogen bonds: X:N.87, X:N.87, A:A.100, A:V.102
- Hydrophobic interactions: I:L.4
LMG.185: 18 residues within 4Å:- Chain 7: F.36
- Chain 8: N.4, L.13, F.14
- Chain X: Y.40, A.327, G.328, N.332, W.450, F.453, F.458
- Chain Z: L.285
- Ligands: CLA.172, CLA.178, CLA.179, BCR.182, BCR.183, LHG.246
10 PLIP interactions:2 interactions with chain 7, 5 interactions with chain X, 2 interactions with chain 8, 1 interactions with chain Z- Hydrophobic interactions: 7:F.36, 7:F.36, X:W.450, X:F.453, X:F.458, 8:L.13, Z:L.285
- Hydrogen bonds: X:Y.40, X:N.332, 8:N.4
LMG.210: 6 residues within 4Å:- Chain Y: F.177, L.180, Y.181, T.200, L.202
- Ligands: DMU.211
3 PLIP interactions:3 interactions with chain Y- Hydrophobic interactions: Y:F.177, Y:F.177, Y:L.180
LMG.220: 13 residues within 4Å:- Chain 1: Q.35, R.39
- Chain 5: F.28, G.31, S.32
- Chain Z: Y.68, G.71, C.72, N.73, F.74
- Ligands: CLA.213, CLA.214, BCR.216
9 PLIP interactions:2 interactions with chain 5, 2 interactions with chain 1, 5 interactions with chain Z- Hydrogen bonds: 5:G.31, 5:S.32, 1:Q.35, 1:R.39, Z:Y.68, Z:F.74
- Hydrophobic interactions: Z:F.74, Z:F.74, Z:F.74
LMG.282: 2 residues within 4Å:- Ligands: CHL.290
- Chain b: Y.137
No protein-ligand interaction detected (PLIP)LMG.284: 13 residues within 4Å:- Ligands: LHG.205, VTQ.283, CLA.315
- Chain e: L.92, L.96, S.97, N.98, N.99, W.103, L.105, F.106, F.109
- Chain i: F.114
6 PLIP interactions:5 interactions with chain e, 1 interactions with chain i- Hydrophobic interactions: e:L.96, e:L.105, e:F.106, e:F.109, i:F.114
- Hydrogen bonds: e:N.99
- 28 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.30: 13 residues within 4Å:- Chain B: G.89, L.90, W.91, F.151, F.156, Y.162
- Ligands: CLA.13, CLA.14, CLA.15, CLA.24, CLA.25, BCR.28, LHG.36
Ligand excluded by PLIPLHG.31: 19 residues within 4Å:- Chain A: A.233, N.234
- Chain B: W.5, Y.6, R.7, F.464, W.468
- Chain D: Y.142, I.145, F.270, F.274, V.277, T.278, M.282
- Ligands: CLA.16, CLA.20, CLA.22, PL9.65, LHG.93
Ligand excluded by PLIPLHG.36: 10 residues within 4Å:- Chain B: F.151, T.159, L.161, P.183, T.207, I.210
- Ligands: LHG.30, DGD.35, CHL.328, CLA.334
Ligand excluded by PLIPLHG.54: 11 residues within 4Å:- Chain C: F.246, W.250, F.257, W.259
- Chain U: W.49
- Ligands: CLA.43, LHG.133, VTQ.134, CLA.147, CLA.148, LUT.151
Ligand excluded by PLIPLHG.66: 25 residues within 4Å:- Chain A: L.28, M.37, N.234
- Chain D: F.258, V.260, A.261, F.262, S.263, N.264, W.267
- Chain L: N.14, T.16, Y.19, W.20, L.23
- Chain Q: L.10, T.13, I.17, A.20, I.21
- Ligands: CLA.1, PHO.3, CLA.60, PL9.65, LHG.93
Ligand excluded by PLIPLHG.67: 20 residues within 4Å:- Chain A: R.140, W.142, F.273, A.276, V.280, W.284
- Chain C: F.33, W.36, A.37, W.443, R.447
- Chain D: E.220, N.221, A.230, N.231, T.232, F.233
- Ligands: SQD.6, CLA.45, CLA.47
Ligand excluded by PLIPLHG.89: 10 residues within 4Å:- Chain G: Y.78, K.217, R.220, L.221, F.224
- Ligands: CHL.71, CLA.72, CLA.81, CLA.83, XAT.90
Ligand excluded by PLIPLHG.93: 29 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.4, W.5, Y.6
- Chain D: W.267, F.270, F.271, F.274
- Chain L: E.12, L.13, N.14, S.17, W.20, G.21, L.23, L.24, V.27
- Chain M: V.17, P.18, F.21, L.22
- Ligands: CLA.20, CLA.23, LMG.29, LHG.31, CLA.60, PL9.65, LHG.66
Ligand excluded by PLIPLHG.94: 13 residues within 4Å:- Chain L: R.15, Y.19
- Chain M: Y.26
- Chain Q: S.12, F.19, F.23
- Chain X: F.108, W.115, V.116
- Ligands: CLA.179, BCR.182, BCR.183, SQD.245
Ligand excluded by PLIPLHG.113: 10 residues within 4Å:- Chain N: W.50, Y.78, K.217, R.220, L.221, F.224
- Ligands: XAT.87, CHL.96, CLA.106, CLA.108
Ligand excluded by PLIPLHG.131: 16 residues within 4Å:- Chain C: V.124
- Chain P: W.62, R.68, Y.93, K.227, R.230, L.231, F.234
- Chain V: I.48
- Ligands: CLA.50, SQD.57, CHL.115, CLA.116, CLA.124, CLA.126, LUT.128
Ligand excluded by PLIPLHG.133: 17 residues within 4Å:- Chain C: A.258, W.259, R.262
- Chain I: F.21
- Chain S: F.106, G.110, W.113, F.116, F.117, T.120
- Ligands: CLA.43, CLA.44, BCR.52, LHG.54, LMG.135, CLA.147, CLA.148
Ligand excluded by PLIPLHG.154: 9 residues within 4Å:- Chain U: Y.77, K.215, L.219, F.222
- Ligands: XAT.136, CHL.137, CLA.138, CLA.147, CLA.149
Ligand excluded by PLIPLHG.186: 13 residues within 4Å:- Chain X: G.89, L.90, W.91, F.151, F.156, Y.162
- Ligands: CLA.169, CLA.170, CLA.171, CLA.180, CLA.181, BCR.184, LHG.189
Ligand excluded by PLIPLHG.187: 19 residues within 4Å:- Chain W: A.233, N.234
- Chain X: W.5, Y.6, R.7, F.464, W.468
- Chain Z: Y.142, I.145, F.270, F.274, V.277, T.278, M.282
- Ligands: CLA.172, CLA.176, CLA.178, PL9.217, LHG.246
Ligand excluded by PLIPLHG.189: 10 residues within 4Å:- Chain X: F.151, T.159, L.161, P.183, T.207, I.210
- Ligands: LHG.186, DGD.188, CHL.253, CLA.259
Ligand excluded by PLIPLHG.205: 16 residues within 4Å:- Chain 4: F.21
- Chain Y: W.259, R.262
- Ligands: CLA.195, CLA.196, BCR.203, LHG.206, LMG.284, CLA.315, CLA.316
- Chain e: F.106, G.110, W.113, F.116, F.117, T.120
Ligand excluded by PLIPLHG.206: 12 residues within 4Å:- Chain Y: F.246, W.250, F.257, W.259
- Ligands: CLA.195, LHG.205, VTQ.283, CLA.315, CLA.316, LUT.319, LHG.321
- Chain i: W.49
Ligand excluded by PLIPLHG.218: 25 residues within 4Å:- Chain 7: N.14, T.16, Y.19, W.20, L.23
- Chain W: L.28, M.37, N.234
- Chain Z: F.258, V.260, A.261, F.262, S.263, N.264, W.267
- Ligands: CLA.155, PHO.156, CLA.212, PL9.217, LHG.246
- Chain c: L.10, T.13, I.17, A.20, I.21
Ligand excluded by PLIPLHG.219: 21 residues within 4Å:- Chain W: R.140, W.142, F.273, A.276, V.280, W.284
- Chain Y: F.33, W.36, A.37, W.443, R.447, E.456
- Chain Z: E.220, N.221, A.230, N.231, T.232, F.233
- Ligands: SQD.160, CLA.197, CLA.199
Ligand excluded by PLIPLHG.241: 9 residues within 4Å:- Chain 2: Y.78, K.217, R.220, L.221, F.224
- Ligands: CHL.223, CLA.233, CLA.235, XAT.242
Ligand excluded by PLIPLHG.246: 29 residues within 4Å:- Chain 7: E.12, L.13, N.14, S.17, W.20, G.21, L.23, L.24, V.27
- Chain 8: V.17, P.18, F.21, L.22
- Chain W: S.232, N.234
- Chain X: P.4, W.5, Y.6
- Chain Z: W.267, F.270, F.271, F.274
- Ligands: CLA.176, CLA.179, LMG.185, LHG.187, CLA.212, PL9.217, LHG.218
Ligand excluded by PLIPLHG.247: 15 residues within 4Å:- Chain 7: R.15, L.18, Y.19
- Chain 8: Y.26
- Chain B: F.108, W.115, V.116
- Chain Y: N.473
- Ligands: CLA.23, BCR.26, BCR.27, SQD.95
- Chain c: S.12, F.19, F.23
Ligand excluded by PLIPLHG.263: 7 residues within 4Å:- Ligands: CLA.248, CLA.257
- Chain a: L.57, K.244, R.247, L.248, V.251
Ligand excluded by PLIPLHG.280: 15 residues within 4Å:- Chain Y: V.124
- Ligands: CLA.202, SQD.209, CHL.264, CLA.265, CLA.273, CLA.274, CLA.275
- Chain b: W.62, R.68, Y.93, K.227, R.230, L.231
- Chain g: I.48
Ligand excluded by PLIPLHG.303: 10 residues within 4Å:- Ligands: XAT.239, CHL.286, CLA.296, CLA.298
- Chain h: W.50, Y.78, K.217, R.220, L.221, F.224
Ligand excluded by PLIPLHG.321: 10 residues within 4Å:- Ligands: LHG.206, XAT.304, CHL.305, CLA.306, CLA.315, CLA.317
- Chain i: Y.77, K.215, L.219, F.222
Ligand excluded by PLIPLHG.338: 6 residues within 4Å:- Ligands: CLA.323, CLA.332
- Chain j: K.244, R.247, L.248, V.251
Ligand excluded by PLIP- 6 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
DMU.56: 13 residues within 4Å:- Chain C: W.97, D.107, P.110, V.113, S.114, L.117, H.118, S.121, K.178
- Chain P: F.262
- Ligands: CLA.40, CLA.50, DMU.132
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain P- Hydrophobic interactions: C:L.117, P:F.262
- Hydrogen bonds: C:D.107, C:K.178, C:K.178
DMU.59: 14 residues within 4Å:- Chain C: L.202, L.204, S.205, P.206, W.239, S.242, I.243, F.246
- Chain U: A.247, D.248, P.249, V.250
- Ligands: LMG.58, CLA.150
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:W.239, C:W.239, C:I.243, C:F.246
DMU.132: 11 residues within 4Å:- Chain C: D.107, F.109, L.117
- Chain P: F.262, N.265, L.267, T.268
- Chain V: N.58
- Ligands: BCR.51, DMU.56, CLA.127
6 PLIP interactions:3 interactions with chain C, 2 interactions with chain V, 1 interactions with chain P- Hydrophobic interactions: C:F.109, C:L.117, P:L.267
- Hydrogen bonds: C:D.107, V:N.58, V:N.58
DMU.208: 12 residues within 4Å:- Chain Y: W.97, D.107, P.110, V.113, S.114, L.117, H.118, S.121, K.178
- Ligands: CLA.192, DMU.281
- Chain b: F.262
5 PLIP interactions:4 interactions with chain Y, 1 interactions with chain b- Hydrophobic interactions: Y:L.117, b:F.262
- Hydrogen bonds: Y:D.107, Y:K.178, Y:K.178
DMU.211: 14 residues within 4Å:- Chain Y: L.202, L.204, S.205, P.206, W.239, S.242, I.243, F.246
- Ligands: LMG.210, CLA.318
- Chain i: A.247, D.248, P.249, V.250
5 PLIP interactions:1 interactions with chain i, 4 interactions with chain Y- Hydrogen bonds: i:L.246
- Hydrophobic interactions: Y:W.239, Y:W.239, Y:I.243, Y:F.246
DMU.281: 11 residues within 4Å:- Chain Y: D.107, F.109, L.117
- Ligands: DMU.208, CLA.276, BCR.285
- Chain b: F.262, N.265, L.267, T.268
- Chain g: N.58
6 PLIP interactions:3 interactions with chain Y, 2 interactions with chain g, 1 interactions with chain b- Hydrophobic interactions: Y:F.109, Y:L.117, b:L.267
- Hydrogen bonds: Y:D.107, g:N.58, g:N.58
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.65: 34 residues within 4Å:- Chain A: F.48, I.49, F.52
- Chain D: M.199, M.200, A.203, G.204, G.207, L.210, L.211, I.214, H.215, T.218, Y.245, M.247, A.250, N.251, W.254, F.258, A.261, F.262, L.268, F.271, V.275
- Chain L: W.20, L.24, V.27, V.30, L.31
- Chain Q: L.10
- Ligands: LHG.31, CLA.60, LHG.66, LHG.93
25 PLIP interactions:17 interactions with chain D, 4 interactions with chain L, 2 interactions with chain A, 2 interactions with chain Q- Hydrophobic interactions: D:A.203, D:L.211, D:L.211, D:I.214, D:I.214, D:T.218, D:Y.245, D:A.250, D:W.254, D:F.258, D:F.262, D:F.262, D:L.268, D:F.271, D:V.275, L:W.20, L:L.24, L:V.30, L:L.31, A:F.48, A:F.52, Q:L.10, Q:L.10
- Hydrogen bonds: D:T.218, D:F.262
PL9.217: 35 residues within 4Å:- Chain 7: W.20, V.27, L.28, V.30, L.31
- Chain W: F.48, I.49, F.52, I.77
- Chain Z: M.199, M.200, A.203, G.204, G.207, L.210, L.211, I.214, H.215, T.218, Y.245, M.247, A.250, N.251, W.254, F.258, A.261, F.262, L.268, F.271, V.275
- Ligands: LHG.187, CLA.212, LHG.218, LHG.246
- Chain c: L.10
26 PLIP interactions:3 interactions with chain W, 17 interactions with chain Z, 4 interactions with chain 7, 2 interactions with chain c- Hydrophobic interactions: W:F.48, W:F.52, W:I.77, Z:A.203, Z:L.211, Z:L.211, Z:I.214, Z:I.214, Z:T.218, Z:Y.245, Z:A.250, Z:W.254, Z:F.258, Z:F.262, Z:F.262, Z:L.268, Z:F.271, Z:V.275, 7:W.20, 7:L.28, 7:V.30, 7:L.31, c:L.10, c:L.10
- Hydrogen bonds: Z:T.218, Z:F.262
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.70: 9 residues within 4Å:- Chain E: H.23, T.26, I.27, L.30
- Chain F: R.13, W.14, H.18, A.21, V.22
9 PLIP interactions:4 interactions with chain E, 5 interactions with chain F,- Hydrophobic interactions: E:T.26, E:I.27, E:L.30, F:A.21
- Metal complexes: E:H.23, F:H.18
- Salt bridges: F:R.13
- pi-Stacking: F:W.14, F:W.14
HEM.222: 8 residues within 4Å:- Chain 0: H.23, T.26, I.27
- Chain 1: R.13, W.14, H.18, A.21, V.22
8 PLIP interactions:3 interactions with chain 0, 5 interactions with chain 1,- Hydrophobic interactions: 0:T.26, 0:I.27, 1:A.21
- Metal complexes: 0:H.23, 1:H.18
- Salt bridges: 1:R.13
- pi-Stacking: 1:W.14, 1:W.14
- 50 x CHL: CHLOROPHYLL B(Non-covalent)
CHL.71: 16 residues within 4Å:- Chain G: V.56, K.57, Y.58, L.59, G.60, F.62, Y.78, W.80, F.224
- Chain U: Q.164, V.165
- Ligands: CLA.72, LHG.89, XAT.90, CHL.143, CHL.145
5 PLIP interactions:4 interactions with chain G, 1 interactions with chain U,- Hydrophobic interactions: G:V.56, G:F.62, G:Y.78, U:V.165
- Metal complexes: G:Y.58
CHL.75: 7 residues within 4Å:- Chain G: S.151, V.153, H.154, Q.156, S.157, I.161
- Ligands: CHL.76
7 PLIP interactions:7 interactions with chain G,- Hydrophobic interactions: G:Q.156, G:I.161
- Hydrogen bonds: G:V.153, G:Q.156, G:S.157
- pi-Stacking: G:H.154
- Metal complexes: G:V.153
CHL.76: 14 residues within 4Å:- Chain G: W.105, L.144, V.153, A.155, I.161, T.164, Q.165, L.168, M.169
- Ligands: CLA.74, CHL.75, CHL.77, LUT.86, NEX.88
7 PLIP interactions:7 interactions with chain G,- Hydrophobic interactions: G:W.105, G:V.153, G:A.155, G:I.161, G:I.161, G:Q.165, G:L.168
CHL.77: 19 residues within 4Å:- Chain G: W.131, F.132, G.135, S.136, I.138, F.139, I.158, Q.165
- Chain N: W.257, A.260, T.261, F.263, V.264
- Ligands: CLA.73, CHL.76, CHL.79, LUT.86, XAT.87, CHL.96
7 PLIP interactions:5 interactions with chain G, 2 interactions with chain N,- Hydrophobic interactions: G:W.131, G:F.132, G:I.138, G:I.158, N:W.257, N:W.257
- Hydrogen bonds: G:Q.165
CHL.78: 21 residues within 4Å:- Chain G: I.101, R.104, W.105, L.108, V.172, Y.175, R.176, G.179, N.180, G.181, P.182, L.183, G.184, A.186, L.189, P.192, S.195, F.196
- Ligands: CLA.80, LUT.85, NEX.88
13 PLIP interactions:13 interactions with chain G,- Hydrophobic interactions: G:L.108, G:V.172, G:R.176, G:R.176, G:P.182, G:L.183, G:A.186, G:P.192, G:F.196
- Hydrogen bonds: G:R.104, G:L.183, G:G.184
- pi-Stacking: G:F.196
CHL.79: 17 residues within 4Å:- Chain G: L.98, I.101, W.105, Q.165, V.166, M.169, G.170, E.173, R.176, V.177
- Chain N: W.80, T.82
- Ligands: CLA.73, CHL.77, CHL.96, CLA.97, LUT.111
13 PLIP interactions:12 interactions with chain G, 1 interactions with chain N,- Hydrophobic interactions: G:I.101, G:W.105, G:W.105, G:W.105, G:M.169, G:E.173, G:V.177, N:T.82
- Hydrogen bonds: G:Q.165
- Salt bridges: G:R.176
- pi-Cation interactions: G:R.176, G:R.176
- Metal complexes: G:E.173
CHL.96: 12 residues within 4Å:- Chain G: W.162
- Chain N: V.56, K.57, Y.58, L.59, Y.78, W.80
- Ligands: CHL.77, CHL.79, XAT.87, CLA.97, LHG.113
4 PLIP interactions:4 interactions with chain N,- Hydrophobic interactions: N:V.56, N:L.59, N:W.80
- Metal complexes: N:Y.58
CHL.100: 12 residues within 4Å:- Chain N: S.151, L.152, V.153, H.154, Q.156, S.157, A.160, I.161
- Chain P: L.134, Y.137
- Ligands: CHL.101, LMG.114
9 PLIP interactions:4 interactions with chain N, 5 interactions with chain P,- Hydrophobic interactions: N:H.154, N:Q.156, N:I.161, P:L.134, P:Y.137, P:Y.137, P:Y.137
- Metal complexes: N:V.153
- Hydrogen bonds: P:Y.137
CHL.101: 13 residues within 4Å:- Chain N: W.105, L.144, V.153, I.161, Q.165, L.168, M.169
- Ligands: CLA.99, CHL.100, CHL.102, CHL.104, LUT.111, NEX.112
8 PLIP interactions:8 interactions with chain N,- Hydrophobic interactions: N:W.105, N:L.144, N:L.144, N:V.153, N:I.161, N:I.161, N:Q.165, N:L.168
CHL.102: 17 residues within 4Å:- Chain N: F.132, G.135, S.136, F.139, I.158, Q.165
- Chain U: W.255, A.258, T.259, F.261, V.262, P.263
- Ligands: CLA.98, CHL.101, LUT.111, XAT.136, CHL.137
6 PLIP interactions:4 interactions with chain N, 2 interactions with chain U,- Hydrophobic interactions: N:F.132, N:I.158, U:W.255, U:W.255
- Hydrogen bonds: N:G.135, N:Q.165
CHL.103: 16 residues within 4Å:- Chain N: R.104, W.105, V.172, Y.175, R.176, G.181, P.182, L.183, G.184, A.186, P.192, S.195, F.196
- Ligands: CLA.105, LUT.110, NEX.112
15 PLIP interactions:15 interactions with chain N,- Hydrophobic interactions: N:V.172, N:Y.175, N:R.176, N:P.182, N:L.183, N:L.183, N:A.186, N:P.192, N:P.192, N:F.196, N:F.196, N:F.196
- Hydrogen bonds: N:R.104, N:L.183, N:G.184
CHL.104: 22 residues within 4Å:- Chain N: E.97, L.98, I.101, H.102, W.105, Q.165, M.169, G.170, E.173, R.176, V.177, F.227, F.230, I.234
- Chain U: Y.57, W.79, T.81
- Ligands: CLA.98, CHL.101, XAT.136, CHL.137, CLA.138
15 PLIP interactions:14 interactions with chain N, 1 interactions with chain U,- Hydrophobic interactions: N:I.101, N:W.105, N:W.105, N:W.105, N:E.173, N:V.177, N:F.227, N:F.230, N:I.234, U:T.81
- Hydrogen bonds: N:Q.165
- Salt bridges: N:R.176
- pi-Cation interactions: N:R.176, N:R.176
- Metal complexes: N:E.173
CHL.115: 9 residues within 4Å:- Chain P: F.70, L.71, P.72, Y.93, Y.95
- Ligands: CLA.50, SQD.57, CLA.116, LHG.131
6 PLIP interactions:6 interactions with chain P,- Hydrophobic interactions: P:P.72, P:Y.95
- Hydrogen bonds: P:Y.95
- pi-Stacking: P:F.70, P:Y.95
- Metal complexes: P:F.70
CHL.119: 13 residues within 4Å:- Chain P: G.151, L.154, I.167, I.169, L.171, A.174, A.177, E.178
- Ligands: CLA.118, CHL.120, CLA.122, LUT.129, NEX.130
4 PLIP interactions:4 interactions with chain P,- Hydrophobic interactions: P:L.154, P:L.154, P:L.171, P:A.174
CHL.120: 10 residues within 4Å:- Chain P: W.147, F.148, G.151, A.152, L.155, V.175, E.178
- Ligands: CLA.117, CHL.119, LUT.129
4 PLIP interactions:4 interactions with chain P,- Hydrophobic interactions: P:W.147, P:F.148, P:L.155, P:V.175
CHL.121: 16 residues within 4Å:- Chain P: R.119, W.120, A.185, Y.188, R.189, N.192, G.193, L.194, F.196, K.199, L.200, P.202, F.206
- Ligands: CLA.123, LUT.128, NEX.130
8 PLIP interactions:8 interactions with chain P,- Hydrophobic interactions: P:Y.188, P:L.194, P:F.196, P:P.202, P:F.206, P:F.206
- Hydrogen bonds: P:G.193, P:L.194
CHL.137: 16 residues within 4Å:- Chain N: W.162, Q.165, V.166
- Chain U: P.55, K.56, Y.57, L.58, G.59, F.61, Y.77, F.222
- Ligands: CHL.102, CHL.104, XAT.136, CLA.138, LHG.154
5 PLIP interactions:4 interactions with chain U, 1 interactions with chain N,- Hydrophobic interactions: U:P.55, U:L.58, U:F.61, N:V.166
- Metal complexes: U:Y.57
CHL.141: 13 residues within 4Å:- Chain U: N.150, I.152, H.153, A.154, Q.155, S.156, A.159, I.160
- Ligands: CLA.140, CHL.142
- Chain a: Y.180, L.181, L.185
7 PLIP interactions:5 interactions with chain U, 2 interactions with chain a,- Hydrophobic interactions: U:I.152, U:Q.155, U:I.160, a:L.181, a:L.185
- Hydrogen bonds: U:I.152
- Metal complexes: U:I.152
CHL.142: 13 residues within 4Å:- Chain U: W.104, L.143, I.152, I.160, V.163, Q.164, M.168
- Ligands: CLA.140, CHL.141, CHL.143, CHL.145, LUT.152, NEX.153
4 PLIP interactions:4 interactions with chain U,- Hydrophobic interactions: U:W.104, U:I.152, U:I.160, U:I.160
CHL.143: 24 residues within 4Å:- Chain G: W.257, A.260, T.261, F.263, V.264, P.265
- Chain U: W.130, F.131, K.132, G.134, S.135, I.137, F.138, I.157, Q.164, F.228, A.231, I.232
- Ligands: CHL.71, XAT.90, CLA.139, CHL.142, CHL.145, LUT.152
13 PLIP interactions:11 interactions with chain U, 2 interactions with chain G,- Hydrophobic interactions: U:W.130, U:W.130, U:F.131, U:I.137, U:F.138, U:I.157, U:F.228, U:A.231, U:I.232, G:W.257
- Hydrogen bonds: U:G.134, U:Q.164, G:F.263
CHL.144: 19 residues within 4Å:- Chain U: I.100, R.103, W.104, L.107, I.171, Y.174, R.175, G.179, P.180, L.181, G.182, P.187, P.190, A.193, F.194, P.196
- Ligands: CLA.146, LUT.151, NEX.153
12 PLIP interactions:12 interactions with chain U,- Hydrophobic interactions: U:I.171, U:I.171, U:Y.174, U:Y.174, U:P.180, U:L.181, U:P.190, U:F.194, U:F.194, U:P.196
- Hydrogen bonds: U:R.103, U:G.179
CHL.145: 21 residues within 4Å:- Chain G: Y.58, W.80, T.82
- Chain U: L.97, I.100, H.101, W.104, Q.164, M.168, G.169, E.172, R.175, I.176, F.225
- Ligands: CHL.71, LUT.86, XAT.90, CLA.98, CLA.139, CHL.142, CHL.143
10 PLIP interactions:9 interactions with chain U, 1 interactions with chain G,- Hydrophobic interactions: U:I.100, U:W.104, U:W.104, U:I.176, U:F.225, G:T.82
- Hydrogen bonds: U:Q.164
- Salt bridges: U:R.175
- pi-Cation interactions: U:R.175
- Metal complexes: U:E.172
CHL.223: 16 residues within 4Å:- Chain 2: V.56, K.57, Y.58, L.59, G.60, F.62, Y.78, W.80, F.224
- Ligands: CLA.224, LHG.241, XAT.242, CHL.311, CHL.313
- Chain i: Q.164, V.165
5 PLIP interactions:4 interactions with chain 2, 1 interactions with chain i,- Hydrophobic interactions: 2:V.56, 2:F.62, 2:Y.78, i:V.165
- Metal complexes: 2:Y.58
CHL.227: 7 residues within 4Å:- Chain 2: S.151, V.153, H.154, Q.156, S.157, I.161
- Ligands: CHL.228
5 PLIP interactions:5 interactions with chain 2,- Hydrophobic interactions: 2:I.161
- Hydrogen bonds: 2:V.153, 2:Q.156, 2:S.157
- Metal complexes: 2:V.153
CHL.228: 13 residues within 4Å:- Chain 2: W.105, G.135, L.144, V.153, A.155, I.161, Q.165
- Ligands: CLA.226, CHL.227, CHL.229, CHL.231, LUT.238, NEX.240
6 PLIP interactions:6 interactions with chain 2,- Hydrophobic interactions: 2:W.105, 2:L.144, 2:V.153, 2:A.155, 2:I.161, 2:I.161
CHL.229: 18 residues within 4Å:- Chain 2: F.132, K.133, G.135, S.136, F.139, I.158, Q.165
- Ligands: CLA.225, CHL.228, CHL.231, LUT.238, XAT.239, CHL.286
- Chain h: W.257, A.260, T.261, F.263, V.264
5 PLIP interactions:4 interactions with chain 2, 1 interactions with chain h,- Hydrophobic interactions: 2:F.132, 2:I.158, h:W.257
- Hydrogen bonds: 2:S.136, 2:Q.165
CHL.230: 22 residues within 4Å:- Chain 2: I.101, R.104, W.105, L.108, V.172, Y.175, R.176, G.179, N.180, G.181, P.182, L.183, G.184, A.186, L.189, P.192, S.195, F.196, P.198
- Ligands: CLA.232, LUT.237, NEX.240
14 PLIP interactions:14 interactions with chain 2,- Hydrophobic interactions: 2:L.108, 2:Y.175, 2:R.176, 2:R.176, 2:P.182, 2:L.183, 2:A.186, 2:P.192, 2:F.196, 2:F.196
- Hydrogen bonds: 2:R.104, 2:L.183, 2:G.184
- pi-Cation interactions: 2:R.176
CHL.231: 20 residues within 4Å:- Chain 2: R.94, L.98, I.101, H.102, W.105, Q.165, V.166, M.169, G.170, E.173, R.176, V.177
- Ligands: CLA.225, CHL.228, CHL.229, CHL.286, CLA.287, LUT.301
- Chain h: W.80, T.82
10 PLIP interactions:9 interactions with chain 2, 1 interactions with chain h,- Hydrophobic interactions: 2:I.101, 2:W.105, 2:W.105, 2:W.105, 2:E.173, 2:V.177, h:T.82
- Hydrogen bonds: 2:Q.165
- Salt bridges: 2:R.176
- Metal complexes: 2:E.173
CHL.252: 11 residues within 4Å:- Ligands: CLA.251, CHL.253, CLA.255, XAT.261, NEX.262
- Chain a: E.173, S.178, L.185, F.187, L.192, E.196
4 PLIP interactions:4 interactions with chain a,- Hydrophobic interactions: a:E.173, a:E.173, a:L.192, a:E.196
CHL.253: 12 residues within 4Å:- Ligands: DGD.188, LHG.189, CHL.252, CLA.259
- Chain a: W.166, Q.167, D.168, G.170, K.171, L.174, I.193, E.196
4 PLIP interactions:4 interactions with chain a,- Hydrophobic interactions: a:L.174, a:I.193
- Hydrogen bonds: a:G.170, a:K.171
CHL.254: 13 residues within 4Å:- Ligands: CLA.256, LUT.260, NEX.262
- Chain a: I.143, R.146, W.147, I.203, Q.206, R.207, E.210, R.216, P.219, F.223
10 PLIP interactions:10 interactions with chain a,- Hydrophobic interactions: a:I.203, a:I.203, a:R.207, a:E.210, a:P.219, a:P.219, a:F.223, a:F.223
- Hydrogen bonds: a:R.146
- pi-Cation interactions: a:R.207
CHL.264: 9 residues within 4Å:- Ligands: CLA.202, SQD.209, CLA.265, LHG.280
- Chain b: F.70, L.71, P.72, Y.93, Y.95
5 PLIP interactions:5 interactions with chain b,- Hydrophobic interactions: b:F.70, b:P.72, b:Y.95
- pi-Stacking: b:F.70
- Metal complexes: b:F.70
CHL.268: 13 residues within 4Å:- Ligands: CLA.267, CHL.269, CLA.271, LUT.278, NEX.279
- Chain b: G.151, L.154, I.167, I.169, A.174, A.177, E.178, L.181
2 PLIP interactions:2 interactions with chain b,- Hydrophobic interactions: b:L.154, b:L.181
CHL.269: 10 residues within 4Å:- Ligands: CLA.266, CHL.268, LUT.278
- Chain b: W.147, F.148, G.151, A.152, L.155, V.175, E.178
4 PLIP interactions:4 interactions with chain b,- Hydrophobic interactions: b:W.147, b:F.148, b:L.155, b:V.175
CHL.270: 15 residues within 4Å:- Ligands: CLA.272, LUT.277, NEX.279
- Chain b: R.119, W.120, Y.188, R.189, N.192, G.193, L.194, F.196, K.199, L.200, P.202, F.206
7 PLIP interactions:7 interactions with chain b,- Hydrophobic interactions: b:Y.188, b:L.194, b:F.196, b:P.202, b:F.206
- Hydrogen bonds: b:G.193, b:L.194
CHL.286: 15 residues within 4Å:- Chain 2: W.162, Q.165
- Ligands: CHL.229, CHL.231, XAT.239, CLA.287, LHG.303
- Chain h: V.56, K.57, Y.58, L.59, G.60, Y.78, W.80, F.224
6 PLIP interactions:6 interactions with chain h,- Hydrophobic interactions: h:V.56, h:L.59, h:Y.78, h:W.80, h:W.80
- Metal complexes: h:Y.58
CHL.290: 12 residues within 4Å:- Ligands: LMG.282, CHL.291
- Chain b: L.134, Y.137
- Chain h: S.151, L.152, V.153, H.154, Q.156, S.157, A.160, I.161
8 PLIP interactions:6 interactions with chain h, 2 interactions with chain b,- Hydrophobic interactions: h:H.154, h:Q.156, h:I.161, b:Y.137
- Hydrogen bonds: h:Q.156, h:S.157, b:Y.137
- Metal complexes: h:V.153
CHL.291: 14 residues within 4Å:- Ligands: CLA.289, CHL.290, CHL.292, CHL.294, LUT.301, NEX.302
- Chain h: W.105, L.144, V.153, A.155, I.161, Q.165, L.168, M.169
8 PLIP interactions:8 interactions with chain h,- Hydrophobic interactions: h:W.105, h:L.144, h:L.144, h:V.153, h:A.155, h:I.161, h:I.161, h:L.168
CHL.292: 18 residues within 4Å:- Ligands: CLA.288, CHL.291, LUT.301, XAT.304, CHL.305
- Chain h: F.132, K.133, G.135, S.136, F.139, I.158, Q.165
- Chain i: W.255, A.258, T.259, F.261, V.262, P.263
6 PLIP interactions:4 interactions with chain h, 2 interactions with chain i,- Hydrophobic interactions: h:F.132, h:I.158, i:W.255, i:W.255
- Hydrogen bonds: h:G.135, h:Q.165
CHL.293: 16 residues within 4Å:- Ligands: CLA.295, LUT.300, NEX.302
- Chain h: R.104, W.105, V.172, Y.175, R.176, G.181, P.182, L.183, G.184, A.186, P.192, S.195, F.196
16 PLIP interactions:16 interactions with chain h,- Hydrophobic interactions: h:V.172, h:Y.175, h:R.176, h:P.182, h:L.183, h:L.183, h:A.186, h:P.192, h:P.192, h:F.196, h:F.196, h:F.196, h:F.196
- Hydrogen bonds: h:R.104, h:L.183, h:G.184
CHL.294: 22 residues within 4Å:- Ligands: CLA.288, CHL.291, XAT.304, CHL.305, CLA.306
- Chain h: E.97, L.98, I.101, H.102, W.105, Q.165, M.169, G.170, E.173, R.176, V.177, F.227, F.230, I.234
- Chain i: Y.57, W.79, T.81
16 PLIP interactions:15 interactions with chain h, 1 interactions with chain i,- Hydrophobic interactions: h:I.101, h:W.105, h:W.105, h:W.105, h:M.169, h:E.173, h:V.177, h:F.227, h:F.230, h:I.234, i:T.81
- Hydrogen bonds: h:Q.165
- Salt bridges: h:R.176
- pi-Cation interactions: h:R.176, h:R.176
- Metal complexes: h:E.173
CHL.305: 17 residues within 4Å:- Ligands: CHL.292, CHL.294, XAT.304, CLA.306, LHG.321
- Chain h: W.162, Q.165, V.166
- Chain i: P.55, K.56, Y.57, L.58, G.59, F.61, Y.77, W.79, F.222
5 PLIP interactions:4 interactions with chain i, 1 interactions with chain h,- Hydrophobic interactions: i:P.55, i:L.58, i:F.61, h:V.166
- Metal complexes: i:Y.57
CHL.309: 13 residues within 4Å:- Ligands: CLA.308, CHL.310
- Chain i: N.150, I.152, H.153, A.154, Q.155, S.156, A.159, I.160
- Chain j: Y.180, L.181, L.185
9 PLIP interactions:7 interactions with chain i, 2 interactions with chain j,- Hydrophobic interactions: i:I.152, i:I.152, i:A.154, i:Q.155, i:I.160, j:L.181, j:L.185
- Hydrogen bonds: i:I.152
- Metal complexes: i:I.152
CHL.310: 11 residues within 4Å:- Ligands: CLA.308, CHL.309, CHL.311, LUT.320, NEX.322
- Chain i: W.104, L.143, I.152, I.160, V.163, Q.164
5 PLIP interactions:5 interactions with chain i,- Hydrophobic interactions: i:W.104, i:I.152, i:I.160, i:I.160, i:Q.164
CHL.311: 24 residues within 4Å:- Chain 2: W.257, A.260, T.261, F.263, V.264, P.265
- Ligands: CHL.223, XAT.242, CLA.307, CHL.310, CHL.313, LUT.320
- Chain i: W.130, F.131, K.132, G.134, S.135, I.137, F.138, I.157, Q.164, F.228, A.231, I.232
14 PLIP interactions:12 interactions with chain i, 2 interactions with chain 2,- Hydrophobic interactions: i:W.130, i:W.130, i:F.131, i:I.137, i:F.138, i:I.157, i:F.228, i:A.231, i:I.232, 2:W.257, 2:P.265
- Hydrogen bonds: i:G.134, i:S.135, i:Q.164
CHL.312: 18 residues within 4Å:- Ligands: CLA.314, LUT.319, NEX.322
- Chain i: R.103, W.104, L.107, I.171, Y.174, R.175, G.179, P.180, L.181, G.182, P.187, P.190, A.193, F.194, P.196
13 PLIP interactions:13 interactions with chain i,- Hydrophobic interactions: i:I.171, i:Y.174, i:Y.174, i:R.175, i:P.180, i:L.181, i:P.190, i:F.194, i:F.194, i:P.196
- Hydrogen bonds: i:R.103, i:G.179
- pi-Stacking: i:F.194
CHL.313: 20 residues within 4Å:- Chain 2: Y.58, W.80, T.82
- Ligands: CHL.223, LUT.238, XAT.242, CLA.288, CLA.307, CHL.311
- Chain i: L.97, I.100, H.101, W.104, Q.164, M.168, G.169, E.172, R.175, I.176, F.225
10 PLIP interactions:9 interactions with chain i, 1 interactions with chain 2,- Hydrophobic interactions: i:I.100, i:W.104, i:W.104, i:I.176, i:F.225, 2:T.82
- Hydrogen bonds: i:Q.164
- Salt bridges: i:R.175
- pi-Cation interactions: i:R.175
- Metal complexes: i:E.172
CHL.327: 12 residues within 4Å:- Ligands: CLA.326, CHL.328, CLA.330, XAT.336, NEX.337
- Chain j: E.173, S.178, L.185, F.187, L.192, I.195, E.196
4 PLIP interactions:4 interactions with chain j,- Hydrophobic interactions: j:E.173, j:E.173, j:L.192, j:E.196
CHL.328: 13 residues within 4Å:- Ligands: DGD.35, LHG.36, CHL.327, CLA.334, XAT.336
- Chain j: W.166, Q.167, D.168, G.170, K.171, L.174, I.193, E.196
4 PLIP interactions:4 interactions with chain j,- Hydrophobic interactions: j:L.174, j:I.193
- Hydrogen bonds: j:G.170, j:K.171
CHL.329: 11 residues within 4Å:- Ligands: CLA.331, LUT.335, NEX.337
- Chain j: I.143, R.146, I.203, Q.206, R.207, R.216, P.219, F.223
5 PLIP interactions:5 interactions with chain j,- Hydrophobic interactions: j:I.203, j:I.203, j:Q.206, j:P.219
- Hydrogen bonds: j:R.146
- 18 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
LUT.85: 20 residues within 4Å:- Chain G: M.107, A.110, L.111, F.196, D.197, P.198, L.199, L.201, N.218, A.222, S.225, F.229, Q.232, P.240, N.243, L.244
- Ligands: CHL.78, CLA.80, CLA.82, CLA.83
Ligand excluded by PLIPLUT.86: 22 residues within 4Å:- Chain G: W.80, D.81, T.82, A.83, H.102, W.105, A.106, G.109, G.112, C.113, W.131, A.134, M.223, M.226, F.227
- Ligands: CLA.72, CLA.73, CLA.74, CHL.76, CHL.77, CLA.139, CHL.145
Ligand excluded by PLIPLUT.110: 21 residues within 4Å:- Chain N: M.107, A.110, L.111, F.196, D.197, P.198, L.199, L.201, N.218, L.221, A.222, S.225, F.229, Q.232, P.240, I.241
- Ligands: CHL.103, CLA.105, CLA.107, CLA.108, CLA.109
Ligand excluded by PLIPLUT.111: 22 residues within 4Å:- Chain N: W.80, D.81, T.82, A.83, H.102, W.105, A.106, G.109, G.112, C.113, W.131, A.134, M.223, M.226, F.227
- Ligands: CLA.73, CHL.79, CLA.97, CLA.98, CLA.99, CHL.101, CHL.102
Ligand excluded by PLIPLUT.128: 20 residues within 4Å:- Chain P: M.122, A.125, I.129, F.206, D.207, P.208, N.228, A.232, A.235, F.239, Q.242, P.250, N.253, L.254
- Ligands: CHL.121, CLA.123, CLA.125, CLA.126, CLA.127, LHG.131
Ligand excluded by PLIPLUT.129: 17 residues within 4Å:- Chain P: Y.95, D.96, P.97, F.98, H.117, W.120, G.124, F.128, W.147, T.150, M.233, M.236
- Ligands: CLA.116, CLA.117, CLA.118, CHL.119, CHL.120
Ligand excluded by PLIPLUT.151: 21 residues within 4Å:- Chain U: M.106, A.109, L.110, F.194, D.195, P.196, L.197, N.216, L.219, S.223, F.227, Q.230, P.238, L.242
- Ligands: LHG.54, VTQ.134, CHL.144, CLA.146, CLA.148, CLA.149, CLA.150
Ligand excluded by PLIPLUT.152: 21 residues within 4Å:- Chain U: W.79, D.80, T.81, A.82, L.84, H.101, W.104, G.108, G.111, C.112, W.130, A.133, M.221, M.224, F.225
- Ligands: CLA.98, CLA.138, CLA.139, CLA.140, CHL.142, CHL.143
Ligand excluded by PLIPLUT.237: 20 residues within 4Å:- Chain 2: M.107, A.110, L.111, F.196, D.197, P.198, L.199, L.201, N.218, A.222, S.225, F.229, Q.232, P.240, N.243, L.244
- Ligands: CHL.230, CLA.232, CLA.234, CLA.235
Ligand excluded by PLIPLUT.238: 21 residues within 4Å:- Chain 2: W.80, D.81, T.82, A.83, H.102, A.106, G.109, G.112, C.113, W.131, A.134, M.223, M.226, F.227
- Ligands: CLA.224, CLA.225, CLA.226, CHL.228, CHL.229, CLA.307, CHL.313
Ligand excluded by PLIPLUT.260: 15 residues within 4Å:- Ligands: CHL.254, CLA.256, CLA.258
- Chain a: M.149, T.152, L.153, F.223, D.224, P.225, L.226, A.252, F.256, Q.259, P.267, L.271
Ligand excluded by PLIPLUT.277: 20 residues within 4Å:- Ligands: CHL.270, CLA.272, CLA.274, CLA.275, CLA.276
- Chain b: M.122, A.125, I.129, F.206, D.207, P.208, N.228, L.231, A.232, A.235, F.239, Q.242, P.250, N.253, L.254
Ligand excluded by PLIPLUT.278: 18 residues within 4Å:- Ligands: CLA.265, CLA.266, CLA.267, CHL.268, CHL.269
- Chain b: Y.95, D.96, P.97, F.98, H.117, W.120, G.124, G.127, F.128, W.147, T.150, M.233, M.236
Ligand excluded by PLIPLUT.300: 21 residues within 4Å:- Ligands: CHL.293, CLA.295, CLA.297, CLA.298, CLA.299
- Chain h: M.107, A.110, L.111, F.196, D.197, P.198, L.199, L.201, N.218, L.221, S.225, F.229, Q.232, P.240, I.241, L.244
Ligand excluded by PLIPLUT.301: 22 residues within 4Å:- Ligands: CLA.225, CHL.231, CLA.287, CLA.288, CLA.289, CHL.291, CHL.292
- Chain h: W.80, D.81, T.82, A.83, H.102, W.105, A.106, G.109, G.112, C.113, W.131, A.134, M.223, M.226, F.227
Ligand excluded by PLIPLUT.319: 22 residues within 4Å:- Ligands: LHG.206, VTQ.283, CHL.312, CLA.314, CLA.316, CLA.317, CLA.318
- Chain i: M.106, A.109, L.110, F.194, D.195, P.196, L.197, N.216, L.219, A.220, S.223, F.227, Q.230, P.238, L.242
Ligand excluded by PLIPLUT.320: 21 residues within 4Å:- Ligands: CLA.288, CLA.306, CLA.307, CLA.308, CHL.310, CHL.311
- Chain i: W.79, D.80, T.81, A.82, L.84, H.101, W.104, G.108, G.111, C.112, W.130, A.133, M.221, M.224, F.225
Ligand excluded by PLIPLUT.335: 15 residues within 4Å:- Ligands: CHL.329, CLA.331, CLA.333
- Chain j: M.149, T.152, L.153, F.223, D.224, P.225, L.226, H.245, A.252, F.256, Q.259, P.267
Ligand excluded by PLIP- 8 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
XAT.87: 10 residues within 4Å:- Chain G: W.162
- Chain N: A.256, W.257, A.260
- Ligands: CHL.77, CHL.96, CLA.106, CLA.108, CLA.109, LHG.113
5 PLIP interactions:4 interactions with chain N, 1 interactions with chain G- Hydrophobic interactions: N:A.256, N:W.257, N:W.257, N:A.260, G:W.162
XAT.90: 14 residues within 4Å:- Chain G: A.256, W.257, F.259, A.260, F.263
- Chain U: W.161, V.165
- Ligands: CHL.71, CLA.81, CLA.83, CLA.84, LHG.89, CHL.143, CHL.145
5 PLIP interactions:4 interactions with chain G, 1 interactions with chain U- Hydrophobic interactions: G:A.256, G:W.257, G:W.257, G:A.260, U:V.165
XAT.136: 13 residues within 4Å:- Chain N: W.162
- Chain U: A.254, W.255, Y.257, A.258, F.261
- Ligands: CHL.102, CHL.104, CHL.137, CLA.147, CLA.149, CLA.150, LHG.154
5 PLIP interactions:4 interactions with chain U, 1 interactions with chain N- Hydrophobic interactions: U:A.254, U:W.255, U:W.255, U:A.258, N:W.162
XAT.239: 10 residues within 4Å:- Chain 2: W.162
- Ligands: CHL.229, CHL.286, CLA.296, CLA.298, CLA.299, LHG.303
- Chain h: A.256, W.257, A.260
3 PLIP interactions:3 interactions with chain h- Hydrophobic interactions: h:A.256, h:W.257, h:W.257
XAT.242: 14 residues within 4Å:- Chain 2: A.256, W.257, F.259, A.260, F.263
- Ligands: CHL.223, CLA.233, CLA.235, CLA.236, LHG.241, CHL.311, CHL.313
- Chain i: W.161, V.165
5 PLIP interactions:4 interactions with chain 2, 1 interactions with chain i- Hydrophobic interactions: 2:A.256, 2:W.257, 2:W.257, 2:A.260, i:V.165
XAT.261: 16 residues within 4Å:- Ligands: CLA.249, CLA.250, CLA.251, CHL.252
- Chain a: F.79, D.80, P.81, F.82, H.144, W.147, G.151, G.154, W.166, A.169, M.250, F.253
5 PLIP interactions:5 interactions with chain a- Hydrophobic interactions: a:W.166, a:F.253
- Hydrogen bonds: a:D.80, a:F.82, a:F.82
XAT.304: 13 residues within 4Å:- Ligands: CHL.292, CHL.294, CHL.305, CLA.315, CLA.317, CLA.318, LHG.321
- Chain h: W.162
- Chain i: A.254, W.255, Y.257, A.258, F.261
5 PLIP interactions:4 interactions with chain i, 1 interactions with chain h- Hydrophobic interactions: i:A.254, i:W.255, i:W.255, i:A.258, h:W.162
XAT.336: 18 residues within 4Å:- Ligands: CLA.324, CLA.325, CLA.326, CHL.327, CHL.328
- Chain j: F.79, D.80, P.81, F.82, H.144, W.147, G.151, G.154, A.155, W.166, A.169, M.250, F.253
7 PLIP interactions:7 interactions with chain j- Hydrophobic interactions: j:F.79, j:W.166, j:M.250, j:F.253
- Hydrogen bonds: j:D.80, j:F.82, j:F.82
- 10 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
NEX.88: 9 residues within 4Å:- Chain G: Y.146, L.168, A.171, V.172, Y.175, P.182
- Ligands: CLA.74, CHL.76, CHL.78
6 PLIP interactions:6 interactions with chain G- Hydrophobic interactions: G:L.168, G:A.171, G:Y.175, G:P.182
- Hydrogen bonds: G:Y.146, G:Y.146
NEX.112: 11 residues within 4Å:- Chain N: W.105, Y.146, L.168, A.171, V.172, Y.175, P.182
- Ligands: CLA.99, CHL.101, CHL.103, CLA.125
5 PLIP interactions:5 interactions with chain N- Hydrophobic interactions: N:W.105, N:L.168, N:A.171, N:P.182
- Hydrogen bonds: N:Y.146
NEX.130: 6 residues within 4Å:- Chain P: W.120, Y.162, Y.188
- Ligands: CLA.118, CHL.119, CHL.121
3 PLIP interactions:3 interactions with chain P- Hydrophobic interactions: P:W.120, P:Y.188
- Hydrogen bonds: P:Y.162
NEX.153: 9 residues within 4Å:- Chain U: Y.145, L.167, I.171, Y.174, P.180
- Ligands: CLA.140, CHL.142, CHL.144
- Chain a: P.225
3 PLIP interactions:3 interactions with chain U- Hydrophobic interactions: U:L.167, U:P.180
- Hydrogen bonds: U:Y.145
NEX.240: 9 residues within 4Å:- Chain 2: Y.146, L.168, A.171, V.172, Y.175, P.182
- Ligands: CLA.226, CHL.228, CHL.230
6 PLIP interactions:6 interactions with chain 2- Hydrophobic interactions: 2:L.168, 2:A.171, 2:Y.175, 2:P.182
- Hydrogen bonds: 2:Y.146, 2:Y.146
NEX.262: 10 residues within 4Å:- Chain U: P.196, L.197
- Ligands: CLA.251, CHL.252, CHL.254
- Chain a: W.147, Y.180, V.199, Y.202, I.203
5 PLIP interactions:4 interactions with chain a, 1 interactions with chain U- Hydrophobic interactions: a:W.147, a:V.199, a:Y.202, U:L.197
- Hydrogen bonds: a:Y.180
NEX.279: 6 residues within 4Å:- Ligands: CLA.267, CHL.268, CHL.270
- Chain b: W.120, Y.162, Y.188
4 PLIP interactions:4 interactions with chain b- Hydrophobic interactions: b:W.120
- Hydrogen bonds: b:Y.162, b:Y.188, b:Y.188
NEX.302: 11 residues within 4Å:- Ligands: CLA.274, CLA.289, CHL.291, CHL.293
- Chain h: Y.146, L.168, M.169, A.171, V.172, Y.175, P.182
4 PLIP interactions:4 interactions with chain h- Hydrophobic interactions: h:L.168, h:A.171, h:P.182
- Hydrogen bonds: h:Y.146
NEX.322: 9 residues within 4Å:- Ligands: CLA.308, CHL.310, CHL.312
- Chain i: Y.145, L.167, I.171, Y.174, P.180
- Chain j: P.225
4 PLIP interactions:4 interactions with chain i- Hydrophobic interactions: i:L.167, i:I.171, i:P.180
- Hydrogen bonds: i:Y.145
NEX.337: 9 residues within 4Å:- Ligands: CLA.326, CHL.327, CHL.329
- Chain i: P.196, L.197
- Chain j: W.147, Y.180, V.199, I.203
3 PLIP interactions:2 interactions with chain j, 1 interactions with chain i- Hydrophobic interactions: j:W.147, j:V.199, i:L.197
- 2 x VTQ: RRR-ALPHA-TOCOPHERYLQUINONE(Non-covalent)
VTQ.134: 10 residues within 4Å:- Chain S: N.99
- Chain U: T.113, K.120, N.121, L.242, F.243
- Ligands: LHG.54, LMG.135, CLA.148, LUT.151
3 PLIP interactions:2 interactions with chain U, 1 interactions with chain S- Hydrophobic interactions: U:L.242
- Hydrogen bonds: U:N.121, S:N.99
VTQ.283: 10 residues within 4Å:- Ligands: LHG.206, LMG.284, CLA.316, LUT.319
- Chain e: N.99
- Chain i: T.113, K.120, N.121, L.242, F.243
5 PLIP interactions:4 interactions with chain i, 1 interactions with chain e- Hydrophobic interactions: i:T.113, i:L.242, i:F.243
- Hydrogen bonds: i:N.121, e:N.99
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caferri, R. et al., A stress-induced paralog of Lhcb4 controls the photosystem II functional architecture in Arabidopsis thaliana. To Be Published
- Release Date
- 2025-06-18
- Peptides
- Photosystem II protein D1: AW
Photosystem II CP47 reaction center protein: BX
Photosystem II CP43 reaction center protein: CY
Photosystem II D2 protein: DZ
Cytochrome b559 subunit alpha: E0
Cytochrome b559 subunit beta: F1
Chlorophyll a-b binding protein 2, chloroplastic: GN2h
Photosystem II reaction center protein H: H3
Photosystem II reaction center protein I: I4
Photosystem II reaction center protein J: J5
Photosystem II reaction center protein K: K6
Photosystem II reaction center protein L: L7
Photosystem II reaction center protein M: M8
Oxygen-evolving enhancer protein 1-1, chloroplastic: O9
Chlorophyll a-b binding protein CP26, chloroplastic: Pb
Photosystem II reaction center protein T: Qc
Photosystem II 5 kDa protein, chloroplastic: Rd
Photosystem II reaction center W protein, chloroplastic: Se
(thale cress) hypothetical protein: Tf
Chlorophyll a-b binding protein 2.2, chloroplastic: Ui
Photosystem II reaction center protein Z: Vg
Chlorophyll a-b binding protein CP29.3, chloroplastic: aj - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AW
aB
BX
bC
CY
cD
DZ
dE
E0
eF
F1
fG
GN
N2
gh
nH
H3
hI
I4
iJ
J5
jK
K6
kL
L7
lM
M8
mO
O9
oP
Sb
sQ
Tc
tR
Ud
uS
We
wT
Xf
xU
Yi
yV
Zg
za
rj
R - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.00 Å
- Oligo State
- hetero-2-2-2-2-2-2-4-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 154 x CLA: CHLOROPHYLL A(Non-covalent)
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
- 20 x BCR: BETA-CAROTENE(Non-covalent)
- 8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
- 8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
- 14 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
- 28 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
- 6 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 50 x CHL: CHLOROPHYLL B(Non-covalent)
- 18 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
- 8 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
- 10 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
- 2 x VTQ: RRR-ALPHA-TOCOPHERYLQUINONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caferri, R. et al., A stress-induced paralog of Lhcb4 controls the photosystem II functional architecture in Arabidopsis thaliana. To Be Published
- Release Date
- 2025-06-18
- Peptides
- Photosystem II protein D1: AW
Photosystem II CP47 reaction center protein: BX
Photosystem II CP43 reaction center protein: CY
Photosystem II D2 protein: DZ
Cytochrome b559 subunit alpha: E0
Cytochrome b559 subunit beta: F1
Chlorophyll a-b binding protein 2, chloroplastic: GN2h
Photosystem II reaction center protein H: H3
Photosystem II reaction center protein I: I4
Photosystem II reaction center protein J: J5
Photosystem II reaction center protein K: K6
Photosystem II reaction center protein L: L7
Photosystem II reaction center protein M: M8
Oxygen-evolving enhancer protein 1-1, chloroplastic: O9
Chlorophyll a-b binding protein CP26, chloroplastic: Pb
Photosystem II reaction center protein T: Qc
Photosystem II 5 kDa protein, chloroplastic: Rd
Photosystem II reaction center W protein, chloroplastic: Se
(thale cress) hypothetical protein: Tf
Chlorophyll a-b binding protein 2.2, chloroplastic: Ui
Photosystem II reaction center protein Z: Vg
Chlorophyll a-b binding protein CP29.3, chloroplastic: aj - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AW
aB
BX
bC
CY
cD
DZ
dE
E0
eF
F1
fG
GN
N2
gh
nH
H3
hI
I4
iJ
J5
jK
K6
kL
L7
lM
M8
mO
O9
oP
Sb
sQ
Tc
tR
Ud
uS
We
wT
Xf
xU
Yi
yV
Zg
za
rj
R - Membrane
-
We predict this structure to be a membrane protein.