Q08174 | SWISS-MODEL Repository

Q08174 (PCDH1_HUMAN) Homo sapiens (Human)

Protocadherin-1 UniProtKB InterPro STRING Interactive Modelling

1060 aa; Sequence (Fasta) ; (Isoform 2)

It is possible new templates exist for this target since these models were created.

Available Structures

4 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Crystal Structure of Human Protocadherin-1 EC1-4	6bx7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	60-500	2×EPE; 22×CA;
Assess
Crystal structure of human protocadherin 1 EC1-EC4	6vfp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	59-497	2×NAG; 2×NAG; 20×CA;
Assess
Crystal Structure of Human Protocadherin-1 EC1-4 with glycosylation	6mga SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	60-496	2×NAG; 2×MAN; 18×CA;
Assess
Crystal Structure of Human Protocadherin-1 EC3-4	6pim SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	273-495	4×CA;
Assess

7 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
6vg4.1.A	monomer	0.68	59-707	5×CA;	35.81
Assess
6vg1.1.A	homo-2-mer	0.67	59-706	6×CA;	33.71
Assess
6vg4.1.A	monomer	0.60	284-823	1×CA;	28.68
Assess
6e6b.1.A	homo-2-mer	0.58	172-811	16×CA;	29.90
Assess
1q55.1.A	monomer	0.55	394-823	2×CA;	22.98
Assess
1q55.1.A	monomer	0.54	173-711	5×CA;	21.82
Assess
1q55.1.A	monomer	0.52	284-818	4×CA;	22.53
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

7 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	6vg4.1.A	monomer	0.67	59-707	5×CA;	35.97
Assess
Isoform 2	6vg1.1.A	homo-2-mer	0.66	59-706	6×CA;	33.71
Assess
Isoform 2	6vg4.1.A	monomer	0.60	284-823	1×CA;	28.68
Assess
Isoform 2	6e6b.1.A	homo-2-mer	0.57	172-811	16×CA;	29.90
Assess
Isoform 2	1q55.1.A	monomer	0.54	394-823	2×CA;	22.98
Assess
Isoform 2	1q55.1.A	monomer	0.53	173-711	5×CA;	21.82
Assess
Isoform 2	1q55.1.A	monomer	0.51	284-818	4×CA;	22.37
Assess

Alignments