Q08499 (PDE4D_HUMAN) Homo sapiens (Human)

cAMP-specific 3',5'-cyclic phosphodiesterase 4D UniProtKBInterProSTRINGInteractive Modelling

809 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5; Isoform 6; Isoform 7; Isoform 8; Isoform 9; Isoform 10; Isoform 11; Isoform 12; ) Identical sequences: Homo sapiens: A0A140VJR0

Sequence Features

 462Proton donor.
 466Divalent metal cation 1.
 502Divalent metal cation 1.
 503Divalent metal cation 1.
 503Divalent metal cation 2.
 620Divalent metal cation 1.
 623Binds AMP, but not cAMP.
 190S -> A (in ACRDYS2; dbSNP:rs397514466). VAR_068242 dbSNP
 225P -> T (in ACRDYS2; dbSNP:rs397514464). VAR_068243 dbSNP
 226F -> S (in ACRDYS2; dbSNP:rs397514465). VAR_068244 dbSNP
 227A -> S (in ACRDYS2). VAR_069448
 228Q -> E (in ACRDYS2; dbSNP:rs397514468). VAR_069449 dbSNP
 301S -> T (in ACRDYS2). VAR_069450
 304A -> V (in ACRDYS2; dbSNP:rs397515433). VAR_069451 dbSNP
 329V -> A (in ACRDYS2). VAR_069452
 587T -> P (in ACRDYS2; dbSNP:rs397514467). VAR_068245 dbSNP
 590E -> A (in ACRDYS2). VAR_069453
 673G -> D (in ACRDYS2; dbSNP:rs397514469). VAR_069454 dbSNP
 678I -> T (in ACRDYS2; dbSNP:rs587777188). VAR_069455 dbSNP
 462-466cAMP.
 223-339Phosphodiesterase 4 upstream conserved r egions (UCR)
IPR040844PF18100
 461-7023'5'-cyclic nucleotide phosphodiesterase , catalytic domain
IPR002073PF00233

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
PDE4 complexed with inhibitor Heteromer
Q08499;
ZN;3KQ;MG;4wcu387-738
Crystal structure of PDE4D in complex with L-869298 Heteromer
Q08499;
M98;ZN;MG;2fm0381-714
Crystal structure of PDE4D2 in complex with (R,S)-rolipram Heteromer
Q08499;
ZN;ROL;1oyn381-714
Crystal structure of PDE4D2 in complex with inhibitor L-869299 Heteromer
Q08499;
M99;ZN;MG;2fm5381-714
Structure of PDE4D2-IBMX Heteromer
Q08499;
ZN;MG;IBM;1zkn381-714
The Crystal Structure of AMP-Bound PDE4 Suggests a Mechanism for Phosphodiesterase Catalysis Heteromer
Q08499;
AMP;ZN;1ptw381-714
'Three dimensional structures of PDE4D in complex with roliprams and implication on inhibitor sel... Heteromer
Q08499;
ZN;ROL;1q9m381-714
Crystal structure of the PDE4D catalytic domain in complex with GEBR-18a Heteromer
Q08499;
ZN;MG;D0E;6f8w383-714
Crystal structure of the PDE4D catalytic domain in complex with GEBR-32a Heteromer
Q08499;
ZN;D5N;MG;DD5;EDO;6fdc385-714
Crystal structure of the PDE4D catalytic domain in complex with GEBR-4a Heteromer
Q08499;
ZN;MG;CZT;6f8t386-714
Crystal structure of the PDE4D catalytic domain in complex with GEBR-7b Heteromer
Q08499;
GOL;MG;ZN;CV8;6f6u386-714
PDE4D complexed with inhibitor Heteromer
Q08499;
ZN;3GJ;4w1o385-713
Crystal structure of the PDE4D catalytic domain in complex with GEBR-18b Heteromer
Q08499;
ZN;MG;D0B;6f8v387-714
crystal structure of PDE4D catalytic domain and zardaverine complexhomo-6-mer ZN;ZAR;MG;1mkd388-715
Crystal Structure of the PDE4D Catalytic Domain and UCR2 Regulatory Helix with BPN5004homo-4-mer MPD;ZN;MG;E31;CL;6boj390-734
Structure of the PDE4D-cAMP complexhomo-2-mer ZN;CMP;2pw3388-714
Crystal structure of PDE4D2 in complex with inhibitor NPVhomo-2-mer ZN;NPV;MG;2qyn388-714
'The structure of the catalytic domain of human PDE4d with 4-(3-Butoxy-4-methoxyphenyl)methyl-2-i...homo-2-mer ZN;0MO;MG;3k4s388-714
Crystal structure of the PDE4D catalytic domain in complex with GEBR-26ghomo-2-mer ZN;DMS;EDO;MG;D08;6f8x392-715
PDE4D crystal structure in complex with small molecule inhibitorhomo-2-mer 6Q2;ZN;MG; 32×EDO;5k32390-713
Crystal structure of human phosphodiesterase 4d (PDE4d) with papaverine.homo-2-mer EV1;ZN;MG;3iak388-711
Crystal structure of the PDE4D catalytic domain in complex with GEBR-54homo-2-mer CZK;MG;ZN;EDO;6f8r392-714
Crystal structure of the PDE4D catalytic domain in complex with GEBR-20bhomo-2-mer ZN;CZQ;MG;6f8u392-714
Crystal Structure of the PDE4D Catalytic Domain and UCR2 Regulatory Helix with T-48monomer ZN;MG;KRD;6njh326-718
Crystal Structure of the PDE4D Catalytic Domain and UCR2 Regulatory Helix with BPN14770monomer ZN;MG;EDO;KR7;SO4;BTB;6njj326-718
Crystal Structure of the PDE4D Catalytic Domain and UCR2 Regulatory Helix with T-49monomer ZN;MG;KR4;6nji326-718
Crystal structure of human phosphodiesterase 4D with bound allosteric modulatormonomer 15X;ZN;EPE;MG;3iad326-714
Crystal structure of human phosphodiesterase 4d with regulatory domain and d155871monomer ZN;D71;CA;MG;3g4g327-714
Crystal structure of human phosphodiesterase 4d with d155988/pmnpqmonomer ZN;EDO;MG;988;SO4;3g58380-714
Crystal structure of PDE4D catalytic domain complexed with Selaginpulvilins Kmonomer ZN;MG;J20;5wqa381-714
Crystal structure of human phosphodiesterase 4d with d155871monomer EOH;ZN;D71;MG;SO4;3g4i384-714
Crystal structure of the catalytic domain of PDE4D2 with (S)-N-(3-{1-[1-(3-Cyclopropylmethoxy-4-d...monomer ZN;IHM;3v9b384-714
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-048monomer ZN;EPE;MG;E6Z; 13×EDO;6ftw383-713
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-226monomer ZN;PEG;D5T;MG; 21×EDO;6fdi384-713
Crystal structure of human phosphodiesterase 4d with roliprammonomer EDO;ZN;ROL;MG;SO4;3g4k384-713
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-356monomer ZN;EPE;MG; 15×EDO;PEG;D62;6fe7384-713
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-001monomer 6M5;ZN;DTT;MG;EDO;5lbo384-713
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-007monomer ZN;PEG;MG;E8H; 20×EDO;EPE;6fw3385-713
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-1439monomer NI;ZN;PEG;MG; 19×EDO;D68;EPE;6fet385-713
Crystal structure of the catalytic domain of PDE4D2 with compound 10Dmonomer ZN;JN4;PO4; 16×EDO;DMS;PEG;3sl4385-713
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-425monomer E6E;ZN;EPE;MG;EDO;6ft0385-713
CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH A TETRAFLUORANLINE COMPOUNDmonomer 7DJ;ZN;EOH;MG;SO4;5tkb386-714
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-3098monomer ZN;EPE;MG;E6N;EDO;6fta385-713
Crystal structure of human phosphodiesterase 4d with roflumilastmonomer ZN;EDO;MG;ROF;SO4;3g4l385-713
Crystal structure of the catalytic domain of PDE4D2 with compound 2monomer ZN;PEG;DMS;EDO;2SR;4ogb385-712
Crystal structure of the catalytic domain of PDE4D2 complexed with compound 10dmonomer ZN;DMS;J25;EDO;3sl5385-712
Crystal structure of the apo form of the catalytic domain of PDE4D2monomer PO4;ZN;PEG; 17×EDO;3sl3385-711
Crystal structure of the catalytic domain of PDE4D2 with compound 12cmonomer ZN;JN8;EDO;3sl6386-712
Crystal structure of the catalytic domain of PDE4D2 with compound 10omonomer ZN;PEG;JN7; 13×EDO;3sl8386-712
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 3,5-dimethyl-1-(3-nitro-phenyl)-1H...monomer ZN; 18×EDO;MG;7DE;1y2k388-713
'Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 3,5-dimethyl-1H-pyrazole-4-carbox...monomer ZN; 11×EDO;MG;DEE;1y2b388-713
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Cilomilastmonomer ZN;CIO;MG;EDO;1xom388-713
Crystal structure of PDE4D2 in complex with inhibitor (S_Zl-n-91)monomer AKJ;ZN;MG;5wh6388-713
'Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 3,5-dimethyl-1-phenyl-1H-pyrazole...monomer 3DE;ZN;MG; 10×EDO;1y2c388-713
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 1-(4-methoxy-phenyl)-3,5-dimethyl-...monomer ZN;MG;4DE; 12×EDO;1y2d388-713
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Piclamilastmonomer B3P;ZN;PIL;MG; 20×EDO;1xon388-713
Crystal structure of the PDE4D2 catalytic domain in complex with inhibitor (R)-Zl-n-91monomer ZN;MG;R91;5wh5388-713
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Roflumilastmonomer ZN;MG;ROF; 12×EDO;1xoq388-713
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 1-(4-amino-phenyl)-3,5-dimethyl-1H...monomer ZN;EDO;MG;5DE;1y2e388-713
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With AMPmonomer AMP;ZN;B3P;MG; 14×EDO;1tb7389-713
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-1086monomer ZN;MG;D5Z;EPE; 11×EDO;6feb390-714
PDE4 crystal structure in complex with small molecule inhibitormonomer 6PT;ZN;MG;5k1i389-713
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Zardaverinemonomer ZN;ZAR;MG;1xor390-713
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Roliprammonomer ZN;ROL;MG;EDO;1tbb390-713
The structure of the RACK1 interaction sites located within the unique N-terminal region of the c...monomer 1e9k250-280

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
homo-2-mer ZN;-0.663g45.1.A305-714
86.71
homo-2-mer ZN;-1.384wzi.1.A223-713
79.22

Homology models built on isoform sequence

Isoform #Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
6monomer-6.131e9k.1.A12-49
100.00
7monomer-6.111e9k.1.A12-49
100.00
7 Heteromer
-0.844wzi.1.A159-180
73.17
12monomer-6.111e9k.1.A12-49
100.00
12homo-2-mer-5.164x0f.1.B159-216
66.00
2homo-2-merZN;-0.553g45.1.A169-578
86.71
2homo-2-merZN;-1.344wzi.1.A87-577
79.22
3homo-2-merZN;-0.553g45.1.A100-509
86.71
3homo-2-merZN;-1.364wzi.1.A18-508
78.76
4homo-2-merZN;-0.783g45.1.A80-489
86.71
4homo-2-merZN;-1.014wzi.1.A45-488
80.68
5homo-2-merZN;-0.763g45.1.A3-412
86.59
5homo-2-merZN;-1.614wzi.1.A1-411
80.60
6homo-2-merZN;-0.613g45.1.A241-650
86.71
6homo-2-merZN;-1.364wzi.1.A159-649
79.22
8homo-2-merZN;-1.073g45.1.A16-423
86.45
8homo-2-merZN;-1.434wzi.1.A16-422
80.43
9homo-2-merZN;-0.623g45.1.A183-592
86.71
9homo-2-merZN;-1.384wzi.1.A101-591
79.22
10homo-2-merZN;-0.573g45.1.A175-584
86.71
10homo-2-merZN;-1.354wzi.1.A93-583
79.22
11homo-2-merZN;-0.613g45.1.A244-653
86.71
11homo-2-merZN;-1.364wzi.1.A162-652
79.22